| Protein: | SCD5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 872 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCD5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..872] | [1..872] |
|
|
3.0E-62 | [294..784] | [212..674] |
|
|
7.0E-59 | [195..866] | [162..824] |
|
|
6.0E-53 | [197..868] | [125..799] |
|
|
2.0E-48 | [197..868] | [99..755] |
|
Region A: Residues: [1-205] |
1 11 21 31 41 51
| | | | | |
1 MSFDWLNVPG LDLSSGDQAE KRPSNGLGPP SVSFDFGINT AAPHDSSFWD QGSRSHSDTT 60
61 LSYRNNHSNT AADNATNVSS PQKDNPPNGE VRTLSGGDVY AESPEDMQVP LSLSQNQLTH 120
121 EEIRTYLRWY HYICLRTHGK LVRLNDVFRF LTNFNLSQKV KDRIVEIFRS CKNALNIGQF 180
181 FAVLRLVSRA IIYGILPLRR MILEK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [206-535] |
1 11 21 31 41 51
| | | | | |
1 APVPKPRPIL SSENHEEVYE EVEDDDSSAK TGDQKVDFDS FASLLLTGKT TRKRVRRRIK 60
61 NLNFKSKKVR FSEHITFQDP PNLNQESSNN SEARKQDPDA EDEDQDSNND SPLDFTLPMD 120
121 QLLKRLYKRR KNSGLVSSLP SEQQETEEEK KVLEDMKDSL SHFKQIQTVD SASLPISSVF 180
181 LQNGNTLPTS NVNNTTVPQQ LPLEPLKPTA TGSANHLVRE EYNQGLHPSN GAIQTGLQPL 240
241 KPTATGSANY LMRSHMEQPQ SIKPSSTPET VTNSGGLQPL KPTATGSANY LMKQHISPSV 300
301 NNPVSSMFQA QFTNQSSSPQ STGPAFLNSP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [536-712] |
1 11 21 31 41 51
| | | | | |
1 NITLPQSNQQ QPYQEVNPTQ AKIEPSNISP QHTYSNNVRI NNGNIVSMPK VEITGAFPPQ 60
61 NTLPQHQQSH LLSPQNTIPQ HQRSQLISPQ NTFTQNQPIL SPQHTYSNNQ ATMISPQNTY 120
121 TNNQQQPQHL PPPPPPRAQQ QQQGAIVPPQ HMYSNVQKQN NLVPTQPSYT NSPSIQS
|
| Detection Method: | |
| Confidence: | 2.045757 |
| Match: | 1m2vB_ |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [713-872] |
1 11 21 31 41 51
| | | | | |
1 PNFLSPQNAA NSYFQSLLSS SPSPNPTPSN ASTVNGNNAS NGISSFQNTS AAMNNTQSHQ 60
61 TYIQQQQQQQ TQQRIYGGQL SQMQQHPGQL HLNNSDIHSQ PNKPNYGMLG QQVHQQQQQQ 120
121 QQQFPFTADV NRSNSSDILG NLQSLQQQVD ALQIQYNRRP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
