YRC Public Data Repository - Protein Structure Prediction

Protein:	SNC2
Organism:	Saccharomyces cerevisiae
Length:	115 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNC2.

Description	E-value	Query Range	Subject Range
gi\|218197691 - gi\|218197691\|gb\|EEC80118.1\| hypothetical protein OsI_21875 [Oryza sativa Indica Group] gi\|34898442, gi\|... - gi\|8096311\|dbj\|BAA95814.1\| putative synaptobrevin 1 [Oryza sativa Japonica Group], gi\|34898442\|ref\|N...	5.0E-28	[1..113]	[100..212]
VA713_ARATH - Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1	8.0E-28	[2..113]	[101..212]
gi\|220949222 - gi\|220949222\|gb\|ACL87154.1\| CG1599-PA [synthetic construct] FBpp0308498, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG1599 (CG1599, FBgn0033452). It is a protein...	4.0E-27	[1..112]	[98..209]
gi\|29840934 - gi\|29840934\|gb\|AAP05935.1\| SJCHGC01984 protein [Schistosoma japonicum]	4.0E-26	[17..110]	[14..107]
SYB_TETCF - Synaptobrevin OS=Tetronarce californica PE=2 SV=1	1.0E-25	[4..95]	[15..103]
gi\|311159 - gi\|311159\|gb\|AAA19816.1\| synaptobrevin	5.0E-25	[1..115]	[1..115]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVPYDPY VPPEESNSGA NPNSQNKTAA LRQEIDDTVG IMRDNINKVA ERGERLTSIE  60
   61 DKADNLAISA QGFKRGANRV RKQMWWKDLK MRMCLFLVVI ILLVVIIVPI VVHFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.29073
Match:	1kilA_
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits