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View Structure Prediction Details

Protein: PMT3
Organism: Saccharomyces cerevisiae
Length: 753 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for PMT3.

Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYRVATGYS EKSTDDDLIW RTPIVKEELE DADNFLKDDA ELYDKVKNES AVSHLDTIVM  60
   61 PIIFTVLGMF TRMYKIGRNN HVVWDEAHFG KFGSYYLRHE FYHD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHPPLGKMLV GLSGYLAGYN GSWDFPSGEV YPDYIDYVKM RLFQAMFSSL CVPLAYFTGR  60
   61 AIGFSRLSVW LFTILVIFEN SYATLGKFIL LDSMLLFFTV SSYFCLAKFH TMRKSPFSAR 120
  121 WWLWLCLTGL NLGCAISVKM VGLFIISVVG IYTISELWNL LSDRSVSWKV YVNHWLARIF 180
  181 GLIIIPVCVF LLCFKIHFDL LSNSGPGDST MPSLFQASLN GTKVGKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [332-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRDVALGSSI ISIKNQALGG ALLHSHVQPF PEGSEQQQVT VYGYSDAN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.958607
Match: PF02815.7
Description: No description for PF02815.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [380-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEWFFQRIRG VEPWTDAENK TIEFVKGGEM YRLMHRLTGK NLHTHEVPAP ISKSEYEVSA  60
   61 YGDVDLGDYK DNWIIEIVEQ 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.49485
Match: PF02815.7
Description: No description for PF02815.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [460-536]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGEEDPTLLH PLSTSFRIKN SILGCYLAQS GKHLPEWGFR QGEVVCLKHA SKRDKRTWWN  60
   61 IETHENERLP QGEDFVY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.79588
Match: PF02815.7
Description: No description for PF02815.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [537-753]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKTSFFRNFM QLNSAMMATN NALVPNPEKF DGIASSAWQW PTLNVGVRLC EWSEKSIKYF  60
   61 LLGSPASVWP SSIAVCALII HVIFLTLKWQ RQCVILSDPV ERDVFVMAAF YPLLAWLLHY 120
  121 MPFVVMSRVV YAHHYLPTLY FALMILSYYF DMITKRWATR NTGKFLRLGA YIVYGSIVIA 180
  181 GFFYFSPFSF GMDGPVDDYA YLAWLPTWQI VEDIRNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle