| Protein: | FAA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 700 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..700] | [107..744] |
|
|
0.0 | [4..699] | [59..695] |
|
|
0.0 | [4..699] | [59..695] |
|
|
0.0 | [4..699] | [59..696] |
|
|
0.0 | [4..700] | [59..696] |
|
|
0.0 | [3..699] | [46..689] |
|
|
0.0 | [17..699] | [52..680] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MVAQYTVPVG KAANEHETAP RRNYQCREKP LVRPPNTKCS TVYEFVLECF QKNKNSNAMG 60
61 WRDVKEIHEE SKSVMKKVD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.256 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.243 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.254 | d.58.48 | MTH1187-like |
| View | Download | 0.251 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.257 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.234 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.208 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.203 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.203 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.202 | a.60.9 | lambda integrase-like, N-terminal domain |
|
Region A: Residues: [80-87] |
1 11 21 31 41 51
| | | | | |
1 GKETSVEK
|
|
Region B: Residues: [101-266] |
1 11 21 31 41 51
| | | | | |
1 SFDQLTDIMH EIGRGLVKIG LKPNDDDKLH LYAATSHKWM KMFLGAQSQG IPVVTAYDTL 60
61 GEKGLIHSLV QTGSKAIFTD NSLLPSLIKP VQAAQDVKYI IHFDSISSED RRQSGKIYQS 120
121 AHDAINRIKE VRPDIKTFSF DDILKLGKES CNEIDVHPPG KDDLCC
|
| Detection Method: | |
| Confidence: | 238.741366 |
| Match: | 1ba3__ |
| Description: | Luciferase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [88-100] |
1 11 21 31 41 51
| | | | | |
1 KWMYYELSHY HYN
|
|
Region B: Residues: [267-554] |
1 11 21 31 41 51
| | | | | |
1 IMYTSGSTGE PKGVVLKHSN VVAGVGGASL NVLKFVGNTD RVICFLPLAH IFELVFELLS 60
61 FYWGACIGYA TVKTLTSSSV RNCQGDLQEF KPTIMVGVAA VWETVRKGIL NQIDNLPFLT 120
121 KKIFWTAYNT KLNMQRLHIP GGGALGNLVF KKIRTATGGQ LRYLLNGGSP ISRDAQEFIT 180
181 NLICPMLIGY GLTETCASTT ILDPANFELG VAGDLTGCVT VKLVDVEELG YFAKNNQGEV 240
241 WITGANVTPE YYKNEEETSQ ALTSDGWFKT GDIGEWEANG HLKIIDRK
|
| Detection Method: | |
| Confidence: | 238.741366 |
| Match: | 1ba3__ |
| Description: | Luciferase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [555-700] |
1 11 21 31 41 51
| | | | | |
1 KNLVKTMNGE YIALEKLESV YRSNEYVANI CVYADQSKTK PVGIIVPNHA PLTKLAKKLG 60
61 IMEQKDSSIN IENYLEDAKL IKAVYSDLLK TGKDQGLVGI ELLAGIVFFD GEWTPQNGFV 120
121 TSAQKLKRKD ILNAVKDKVD AVYSSS
|
| Detection Method: | |
| Confidence: | 238.741366 |
| Match: | 1ba3__ |
| Description: | Luciferase |
| Matching Structure (courtesy of the PDB): |
|
