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View Structure Prediction Details

Protein: RPL20B
Organism: Saccharomyces cerevisiae
Length: 174 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL20B.

Description E-value Query
Range		 Subject
Range
ENSCJAT00000027218 - null
RL18A_BOVIN - 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1
gi|90081908 - gi|90081908|dbj|BAE90235.1| unnamed protein product [Macaca fascicularis]
RPL18A - ribosomal protein L18a
 4.0E-82 [3..174] [4..176]
gi|27769162 - gi|27769162|gb|AAH42256.1| RPL18A protein [Xenopus laevis]
 4.0E-79 [3..174] [6..178]
RL18A_DANRE - 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1
 2.0E-78 [3..174] [4..176]
RL18A_ICTPU - 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1
 5.0E-76 [3..174] [4..176]
gi|28189583 - gi|28189583|dbj|BAC56406.1| similar to ribosomal protein L18a [Bos taurus]
 6.0E-76 [3..158] [4..158]
RL18A_SALSA - 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1
 2.0E-75 [3..174] [4..176]
gi|82904428, gi|... - gi|94382054|ref|XP_999518.1| PREDICTED: similar to ribosomal protein L18a [Mus musculus], gi|8290442...
 5.0E-72 [3..174] [4..175]

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Predicted Domain #1
Region A:
Residues: [1-174] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLAHFKEYQ VIGRRLPTES VPEPKLFRMR IFASNEVIAK SRYWYFLQKL HKVKKASGEI  60
   61 VSINQINEAH PTKVKNFGVW VRYDSRSGTH NMYKEIRDVS RVAAVETLYQ DMAARHRARF 120
  121 RSIHILKVAE IEKTADVKRQ YVKQFLTKDL KFPLPHRVQK STKTFSYKRP STFY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 132.958607
Match: PF01775
Description: Ribosomal L18ae protein family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle