YRC Public Data Repository - Protein Structure Prediction

Protein:	RDL2
Organism:	Saccharomyces cerevisiae
Length:	149 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDL2.

Description	E-value	Query Range	Subject Range
RDL2_YEAST - Thiosulfate sulfurtransferase RDL2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... RDL2 - Protein with rhodanese activity; contains a rhodanese-like domain similar to Rdl1p, Uba4p, Tum1p, an... gi\|151945368 - gi\|151945368\|gb\|EDN63611.1\| conserved protein [Saccharomyces cerevisiae YJM789]	6.0E-32	[1..149]	[1..149]
gi\|77634418 - gi\|77634418\|ref\|ZP_00796519.1\| COG1054: Predicted sulfurtransferase [Yersinia pestis Angola] Y1866_YERPP - UPF0176 protein YPDSF_1866 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1866 PE=3 SV=1 Y1560_YERP3 - UPF0176 protein YpsIP31758_1560 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|229694348, gi... - gi\|229837982\|ref\|ZP_04458141.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229701813, gi... - gi\|229895179\|ref\|ZP_04510354.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701813\|gb\|EEO... gi\|229688092, gi... - gi\|229898544\|ref\|ZP_04513689.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|166204253, gi... - gi\|166214551\|ref\|ZP_02240586.1\| rhodanese domain protein [Yersinia pestis biovar Antiqua str. B42003... gi\|167053992, gi... - gi\|167427013\|ref\|ZP_02318766.1\| rhodanese domain protein [Yersinia pestis biovar Mediaevalis str. K1... gi\|167469920 - gi\|167469920\|ref\|ZP_02334624.1\| hypothetical protein YpesF_19004 [Yersinia pestis FV-1] Y1668_YERPY - UPF0176 protein YPK_1668 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1668 PE=3... Y2579_YERPB - UPF0176 protein YPTS_2579 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2579 PE=... gi\|149365640, gi... - gi\|149365640\|ref\|ZP_01887675.1\| hypothetical protein YPE_0808 [Yersinia pestis CA88-4125], gi\|149292... Y2488_YERPS - UPF0176 protein YPTB2488 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2488 PE=3... Y2488_YERPS - UPF0176 protein YPTB2488 OS=Yersinia pseudotuberculosis GN=YPTB2488 PE=3 SV=1 gi\|165920572, gi... - gi\|165927517\|ref\|ZP_02223349.1\| rhodanese domain protein [Yersinia pestis biovar Orientalis str. F19... Y2451_YERPE - UPF0176 protein YPO2451/y1738/YP_2271 OS=Yersinia pestis GN=YPO2451 PE=3 SV=1 gi\|115348151, gi... - gi\|218929540\|ref\|YP_002347415.1\| hypothetical protein YPO2451 [Yersinia pestis CO92], gi\|16122672\|re... gi\|165992783, gi... - gi\|166008401\|ref\|ZP_02229299.1\| rhodanese domain protein [Yersinia pestis biovar Antiqua str. E19790... gi\|89105322, gi\|... - gi\|89105322\|ref\|ZP_01177843.1\| COG1054: Predicted sulfurtransferase [Yersinia pestis biovar Oriental... Y2048_YERPN - UPF0176 protein YPN_2048 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2048 PE=3 SV=1	4.0E-25	[5..144]	[105..242]
gi\|255503550 - gi\|255503550\|ref\|ZP_05381940.1\| hypothetical protein Ctra7_03360 [Chlamydia trachomatis 70s] gi\|255507229 - gi\|255507229\|ref\|ZP_05382868.1\| hypothetical protein CtraD_03340 [Chlamydia trachomatis D(s)2923] Y627_CHLTR - UPF0176 protein CT_627 OS=Chlamydia trachomatis GN=CT_627 PE=3 SV=1 gi\|255317751 - gi\|255317751\|ref\|ZP_05358997.1\| hypothetical protein Ctra6_03295 [Chlamydia trachomatis 6276s] gi\|255349011 - gi\|255349011\|ref\|ZP_05381018.1\| hypothetical protein Ctra70_03355 [Chlamydia trachomatis 70] Y627_CHLTR - UPF0176 protein CT_627 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_627 PE=3 SV=1 gi\|231274290, gi... - gi\|237803056\|ref\|YP_002888250.1\| hypothetical protein JALI_6311 [Chlamydia trachomatis], gi\|23127429... gi\|255311450 - gi\|255311450\|ref\|ZP_05354020.1\| hypothetical protein Ctra62_03305 [Chlamydia trachomatis 6276] Y680_CHLTA - UPF0176 protein CTA_0680 OS=Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-1...	6.0E-25	[6..138]	[85..210]
gi\|133916152, gi... - gi\|134103529\|ref\|YP_001109190.1\| thiosulfate sulfurtransferase [Saccharopolyspora erythraea NRRL 233... THTR_SACER - Putative thiosulfate sulfurtransferase OS=Saccharopolyspora erythraea GN=cysA PE=1 SV=1	1.0E-24	[4..147]	[113..275]
Y916_CHLMU - UPF0176 protein TC_0916 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0916 PE=3 SV=1 Y916_CHLMU - UPF0176 protein TC_0916 OS=Chlamydia muridarum GN=TC_0916 PE=3 SV=1	2.0E-24	[6..138]	[85..210]
YCEA_SALTY - UPF0176 protein yceA OS=Salmonella typhimurium GN=yceA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yceA] [protein=hypothetical protein] [protein_id=YP_005236908.1] [location=1201918..1202970] YCEA_SALTY - UPF0176 protein YceA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yceA PE=3 SV... YCEA_SALTY - UPF0176 protein yceA OS=Salmonella typhimurium GN=yceA PE=3 SV=1 gi\|167994016, gi... - gi\|205328015\|gb\|EDZ14779.1\| protein YceA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s...	3.0E-24	[5..144]	[105..242]
gi\|7188951, gi\|1... - gi\|7188951\|gb\|AAF37908.1\| conserved hypothetical protein [Chlamydophila pneumoniae AR39], gi\|1675230... Y734_CHLPN - UPF0176 protein CPn_0734/CP_0012/CPj0734/CpB0762 OS=Chlamydia pneumoniae GN=CPn_0734 PE=3 SV=1 gi\|15836266, gi\|... - gi\|8979106\|dbj\|BAA98941.1\| YceA hypothetical protein [Chlamydophila pneumoniae J138], gi\|15836266\|re... gi\|4377040, gi\|1... - gi\|4377040\|gb\|AAD18873.1\| YceA hypothetical protein [Chlamydophila pneumoniae CWL029], gi\|15618644\|r... gi\|33236603, gi\|... - gi\|33242093\|ref\|NP_877034.1\| hypothetical protein CpB0762 [Chlamydophila pneumoniae TW-183], gi\|3323...	6.0E-24	[6..142]	[85..214]
YCEA_ECO57 - UPF0176 protein YceA OS=Escherichia coli O157:H7 GN=yceA PE=3 SV=1 gi\|15801172, gi\|... - gi\|15801172\|ref\|NP_287189.1\| hypothetical protein Z1691 [Escherichia coli O157:H7 EDL933], gi\|125145... gi\|209773582, gi... - pir\|\|E85667 hypothetical protein yceA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217318579, gi... - gi\|217328152\|ref\|ZP_03444234.1\| rhodanese domain protein [Escherichia coli O157:H7 str. TW14588], gi... gi\|208815575, gi... - gi\|208815575\|ref\|ZP_03256754.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208728481, gi... - gi\|208808680\|ref\|ZP_03251017.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4206], gi\|... YCEA_ECO5E - UPF0176 protein YceA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yceA PE=3 SV=1 gi\|208738042, gi... - gi\|208822557\|ref\|ZP_03262876.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|13360897, gi\|... - gi\|15830687\|ref\|NP_309460.1\| hypothetical protein ECs1433 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168789990, gi... - gi\|189370468\|gb\|EDU88884.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|254792437, gi... - gi\|254792437\|ref\|YP_003077274.1\| hypothetical protein ECSP_1356 [Escherichia coli O157:H7 str. TW143... gi\|188999112, gi... - gi\|188999112\|gb\|EDU68098.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|195935444 - gi\|195935444\|ref\|ZP_03080826.1\| hypothetical protein EscherichcoliO157_03137 [Escherichia coli O157:... gi\|168802000, gi... - gi\|189375947\|gb\|EDU94363.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC508], gi\|16880... gi\|168764467, gi... - gi\|189365536\|gb\|EDU83952.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|188018044, gi... - gi\|188018044\|gb\|EDU56166.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168773900, gi... - gi\|187770468\|gb\|EDU34312.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189363247, gi... - gi\|189363247\|gb\|EDU81666.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4486], gi\|1687...	6.0E-24	[5..144]	[105..242]
gi\|29137826, gi\|... - gi\|29142196\|ref\|NP_805538.1\| hypothetical protein t1764 [Salmonella enterica subsp. enterica serovar... gi\|213427724 - gi\|213427724\|ref\|ZP_03360474.1\| hypothetical protein SentesTyphi_20330 [Salmonella enterica subsp. e... gi\|16760033 - gi\|16760033\|ref\|NP_455650.1\| hypothetical protein STY1193 [Salmonella enterica subsp. enterica serov... gi\|213618624 - gi\|213618624\|ref\|ZP_03372450.1\| hypothetical protein SentesTyp_20025 [Salmonella enterica subsp. ent... gi\|213647661 - gi\|213647661\|ref\|ZP_03377714.1\| hypothetical protein SentesTy_10462 [Salmonella enterica subsp. ente... YCEA_SALTI - UPF0176 protein YceA OS=Salmonella typhi GN=yceA PE=3 SV=1 YCEA_SALTI - UPF0176 protein yceA OS=Salmonella typhi GN=yceA PE=3 SV=1 gi\|213053060 - gi\|213053060\|ref\|ZP_03345938.1\| hypothetical protein Salmoneentericaenterica_09155 [Salmonella enter...	6.0E-24	[5..144]	[105..242]
EG11116 - putative rhodanese-related sulfurtransferase / Predicted rhodanese, function unknown EG11116 - putative rhodanese-related sulfurtransferase / Predicted rhodanese, function unknown gi\|194423065, gi... - gi\|83586410\|ref\|ZP_00925044.1\| COG1054: Predicted sulfurtransferase [Escherichia coli 101-1], gi\|194... gi\|188487775, gi... - gi\|75513500\|ref\|ZP_00735904.1\| COG1054: Predicted sulfurtransferase [Escherichia coli 53638], gi\|188... YCEA_ECOLI - UPF0176 protein yceA (ORF39.9) - Escherichia coli YCEA_ECODH - UPF0176 protein YceA OS=Escherichia coli (strain K12 / DH10B) GN=yceA PE=3 SV=1 gi\|89107901, gi\|... - gi\|89107901\|ref\|AP_001681.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YCEA_ECOBW - UPF0176 protein YceA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yceA PE=3 SV=1	6.0E-24	[5..144]	[105..242]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKHSTGILS RTVSARSPTL VLRTFTTKAP KIYTFDQVRN LVEHPNDKKL LVDVREPKEV  60
   61 KDYKMPTTIN IPVNSAPGAL GLPEKEFHKV FQFAKPPHDK ELIFLCAKGV RAKTAEELAR 120
  121 SYGYENTGIY PGSITEWLAK GGADVKPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1orb__
Description:	Rhodanese
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.707400650337243	bayes_pls_golite062009
catalytic activity	0.687308230067573	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: