| Protein: | VPH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 840 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [7..827] | [3..827] |
|
|
0.0 | [7..827] | [3..833] |
|
|
0.0 | [7..832] | [3..831] |
|
|
0.0 | [7..827] | [3..833] |
|
|
0.0 | [8..830] | [4..846] |
|
Region A: Residues: [1-371] |
1 11 21 31 41 51
| | | | | |
1 MAEKEEAIFR SAEMALVQFY IPQEISRDSA YTLGQLGLVQ FRDLNSKVRA FQRTFVNEIR 60
61 RLDNVERQYR YFYSLLKKHD IKLYEGDTDK YLDGSGELYV PPSGSVIDDY VRNASYLEER 120
121 LIQMEDATDQ IEVQKNDLEQ YRFILQSGDE FFLKGDNTDS TSYMDEDMID ANGENIAAAI 180
181 GASVNYVTGV IARDKVATLE QILWRVLRGN LFFKTVEIEQ PVYDVKTREY KHKNAFIVFS 240
241 HGDLIIKRIR KIAESLDANL YDVDSSNEGR SQQLAKVNKN LSDLYTVLKT TSTTLESELY 300
301 AIAKELDSWF QDVTREKAIF EILNKSNYDT NRKILIAEGW IPRDELATLQ ARLGEMIARL 360
361 GIDVPSIIQV L
|
| Detection Method: |  |
| Confidence: | 36.522879 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [372-840] |
1 11 21 31 41 51
| | | | | |
1 DTNHTPPTFH RTNKFTAGFQ SICDCYGIAQ YREINAGLPT IVTFPFMFAI MFGDMGHGFL 60
61 MTLAALSLVL NEKKINKMKR GEIFDMAFTG RYIILLMGVF SMYTGFLYND IFSKTMTIFK 120
121 SGWKWPDHWK KGESITATSV GTYPIGLDWA WHGTENALLF SNSYKMKLSI LMGFIHMTYS 180
181 YFFSLANHLY FNSMIDIIGN FIPGLLFMQG IFGYLSVCIV YKWAVDWVKD GKPAPGLLNM 240
241 LINMFLSPGT IDDELYPHQA KVQVFLLLMA LVCIPWLLLV KPLHFKFTHK KKSHEPLPST 300
301 EADASSEDLE AQQLISAMDA DDAEEEEVGS GSHGEDFGDI MIHQVIHTIE FCLNCVSHTA 360
361 SYLRLWALSL AHAQLSSVLW TMTIQIAFGF RGFVGVFMTV ALFAMWFALT CAVLVLMEGT 420
421 SAMLHSLRLH WVESMSKFFV GEGLPYEPFA FEYKDMEVAV ASASSSASS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
