YRC Public Data Repository - Protein Structure Prediction

Protein:	SRL1
Organism:	Saccharomyces cerevisiae
Length:	210 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRL1.

Description	E-value	Query Range	Subject Range
gi\|151945333 - gi\|151945333\|gb\|EDN63576.1\| suppressor of rad53 null lethality [Saccharomyces cerevisiae YJM789] SRL1_YEAST - Cell wall protein SRL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRL1 PE=1 SV=1 SRL1 - Mannoprotein that exhibits a tight association with the cell wall, required for cell wall stability ... gi\|207340974 - gi\|207340974\|gb\|EDZ69159.1\| YOR247Wp-like protein [Saccharomyces cerevisiae AWRI1631]	1.0E-41	[1..210]	[1..210]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-5	[17..209]	[1108..1273]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSVVFFAL LTFASSVSAI YSNNTVSTTT TLAPSYSLVP QETTISYADD TTTFFVTSTV  60
   61 YSTSWFTSTS ATITNAASSS LSTSSASGSV TPESTHEITS TSTITSTLLL TLHDSTTLSP 120
  121 SSTAASVSDE DSNNKDAKVK SFEQASTSNG CVPITKFVTV TNEPVTQYVT VTPNTTTQYV 180
  181 TVTGAPSVTT TSPGNVQWYN TTSITNSTSW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits