YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR238W
Organism:	Saccharomyces cerevisiae
Length:	306 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR238W.

Description	E-value	Query Range	Subject Range
YDJ7_SCHPO - Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A1... SPAC57A10.07 - conserved protein (fungal and protazoan)	2.0E-85	[10..301]	[79..311]
gi\|15218978, gi\|... - gi\|42571573\|ref\|NP_973877.1\| unknown protein [Arabidopsis thaliana], gi\|15218978\|ref\|NP_173559.1\| un...	2.0E-80	[10..301]	[109..341]
gi\|14250902 - gi\|14250902\|emb\|CAC39256.1\| hypothetical protein [Trypanosoma brucei]	1.0E-79	[10..301]	[56..308]
gi\|11595608, gi\|... - gi\|32412702\|ref\|XP_326831.1\| hypothetical protein ( (AL451017) conserved hypothetical protein [Neuro... gi\|85102934 - gi\|85102934\|ref\|XP_961424.1\| hypothetical protein ( (AL451017) conserved hypothetical protein [Neuro...	4.0E-50	[10..285]	[8..245]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSMDEKVEL ILVPCHSIWK SSSHPSDNSV NLGQLPEYWH LAPFQYEGND HLAFIKHGLT  60
   61 AIKLLLQRFD TATVIFSGSQ TKKEAGAISE AQSYYFLFEK LIRYVMSNDN IDVPNFDNEL 120
  121 RLLLKEVKNL LSSQNVNVDE LFYGGSITTE EFSLDSFDNL IYSIYRFEEV NKKFPQKITI 180
  181 IGFAFKMPRF ISCHAKAIDY PQSNITYIGI DPKPANYNQT QLSKYYDDLV QMEDKNALSL 240
  241 FSSDWYATKD RLLTKKRSRN PFNRTAPYAQ NIFCKENGKR IEGIEDDEEY FETKIKCKMP 300
  301 WSSPRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits