YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR223W
Organism:	Saccharomyces cerevisiae
Length:	292 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR223W.

Description	E-value	Query Range	Subject Range
gi\|207341012 - gi\|207341012\|gb\|EDZ69187.1\| YOR223Wp-like protein [Saccharomyces cerevisiae AWRI1631] YO223_YEAST - Transmembrane protein YOR223W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR223W PE... gi\|190407532 - gi\|190407532\|gb\|EDV10799.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151945312 - gi\|151945312\|gb\|EDN63555.1\| conserved protein [Saccharomyces cerevisiae YJM789] YOR223W - Putative protein of unknown function	0.0	[1..292]	[1..292]
DSC3_SCHPO - DSC E3 ubiquitin ligase complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... SPAC20H4.02 - conserved fungal protein	9.0E-90	[26..292]	[11..248]

Back

Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEPLLPTH NGSQGGEVRS PDQKFIVIRF SDVSVRDLQL NISNVPFSNI NTHWLRRMCR  60
   61 ELRPQQTQKR RLKFIRNGSI LNTHSKIAEE LTHYFDTANN SNVATGTSVA PEQNNYYIHC 120
  121 IIGTEELTQA ELANEDLKDD ATPSNDSMTT QAIGFDRLRS VGFTEQEIEL LRQQFRATYG 180
  181 DLEEEEERLA QNGNRDDEGH DIRQLEEQWM ESGSGTAQGN GAGGGNEDRF NSVPIANIKH 240
  241 NKDLLLGICV GFFFGVFGIL LMKFDGLFNR RQKMAIFAGV IVNVMFCLVR GF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [111-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEQNNYYIHC IIGTEELTQA ELANEDLKDD ATPSNDSMTT QAIGFDRLRS VGFTEQEIEL  60
   61 LRQQFRATYG DLEEEEERLA QNGNRDDEGH DIRQLEEQWM ESGSGTAQGN GAGGGNEDRF 120
  121 NSVPIANIKH NKDLLLGICV GFFFGVFGIL LMKFDGLFNR RQKMAIFAGV IVNVMFCLVR 180
  181 GF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits