YRC Public Data Repository - Protein Structure Prediction

Protein:	ODC2
Organism:	Saccharomyces cerevisiae
Length:	307 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ODC2.

Description	E-value	Query Range	Subject Range
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	9.0E-87	[7..300]	[3..298]
gi\|90085585 - gi\|90085585\|dbj\|BAE91533.1\| unnamed protein product [Macaca fascicularis] SLC25A6 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	3.0E-86	[7..300]	[3..298]
ADT1_MOUSE - ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4	2.0E-85	[6..299]	[2..297]
gi\|148224610, gi... - gi\|7542476\|gb\|AAF63471.1\|AF231347_1 adenine nucleotide translocase [Xenopus laevis], gi\|27882617\|gb\|...	3.0E-85	[10..300]	[6..298]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-85	[6..299]	[2..297]
ADT1_RAT - ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc25a4 PE=1 SV=3	4.0E-85	[6..299]	[2..297]

Back

Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDSNAKPL PFIYQFISGA VAGISELTVM YPLDVVKTRF QLEVTTPTAA AVGKQVERYN  60
   61 GVIDCLKKIV KKEGFSRLYR GISSPMLMEA PKRATKFACN DQYQKIFKNL FNTNETTQKI 120
  121 SIAAGASAGM TEAAVIVPFE LIKIRMQDVK SSYLGPMDCL KKTIKNEGIM GLYKGIESTM 180
  181 WRNALWNGGY FGVIYQVRNS MPVAKTKGQK TRNDLIAGAI GGTVGTMLNT PFDVVKSRIQ 240
  241 SVDAVSSAVK KYNWCLPSLL VIYREEGFRA LYKGFVPKVC RLAPGGSLML VVFTGMMNFF 300
  301 RDLKYGH

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.89
Match:	1is2A
Description:	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits