YRC Public Data Repository - Protein Structure Prediction

Protein:	RUD3
Organism:	Saccharomyces cerevisiae
Length:	484 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUD3.

Description	E-value	Query Range	Subject Range
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	7.0E-78	[2..481]	[940..1438]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-77	[2..481]	[154..652]
gi\|179508, gi\|10... - sp\|P12883\|MYH7_HUMAN Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta), gi\|4557773\|ref\|NP...	3.0E-77	[2..481]	[938..1436]
MYH7_BOVIN - Myosin-7 OS=Bos taurus GN=MYH7 PE=1 SV=1	5.0E-77	[2..481]	[938..1436]
MYH7_MOUSE - Myosin-7 OS=Mus musculus GN=Myh7 PE=1 SV=1	7.0E-77	[2..481]	[938..1436]
MYH4_RABIT - Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 PE=1 SV=1	7.0E-77	[2..481]	[941..1439]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNKKKTGK KAKSHPHVED VDETVNKPEE IINSVNVTVP PKMSTDPEAD GIVASPDDEG  60
   61 KDLSEGVDKQ KVNDGLTVDT INPLEDKKAG DEMKELREEI ERLKLELSHK KDQETPNEDF 120
  121 KNELANVIKE RDEFKTQYDT LLSKISSMKS IFNKMKEAQK QLEEVQEQLT EYESQNLKLK 180
  181 KKLEATKTEN SELQSTIVTL NTELENLEKE QESTEEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [218-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLEYESRIEA LEDEKHDIIE KHSKELNTYR KEKDQLNLQV QELMIILENN KQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2tmaA_
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [270-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DISDLRTERD ELRQALESHE KEKAVLKNSL NDLELKIEEV DNKREEEARE RDQEVKSLRS  60
   61 QLDTEIETHN NDTEALESMK KQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2tmaA_
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [352-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEAMKEDASM KEKYEEESKQ HILQIGKLRH EAIILNEHLT KALAMLKKSS DSESVDKELI  60
   61 SN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2tmaA_
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [414-484]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLISFVSIPR ADPRKFEVLE LLSNFLNWDE DKKQQAGLIS NNESKNSSAV SRTESFVSLW  60
   61 TNYLEKESEK D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2tmaA_
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits