YRC Public Data Repository - Protein Structure Prediction

Protein:	AIM41
Organism:	Saccharomyces cerevisiae
Length:	185 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIM41.

Description	E-value	Query Range	Subject Range
AIM41 - Putative protein of unknown function; the authentic protein is detected in highly purified mitochond... AIM41_YEAS6 - Altered inheritance of mitochondria protein 41, mitochondrial OS=Saccharomyces cerevisiae (strain AW... AIM41_YEAS1 - Altered inheritance of mitochondria protein 41, mitochondrial OS=Saccharomyces cerevisiae (strain RM... AIM41_YEAST - Altered inheritance of mitochondria protein 41, mitochondrial OS=Saccharomyces cerevisiae (strain AT... AIM41_YEAS2 - Altered inheritance of mitochondria protein 41, mitochondrial OS=Saccharomyces cerevisiae (strain JA...	8.0E-56	[1..185]	[1..185]
gi\|7227210, gi\|1... - gi\|7227210\|gb\|AAF42280.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15677781\|... gi\|11353087 - pir\|\|H81023 conserved hypothetical protein NMB1951 [imported] - Neisseria meningitidis (strain MC58 ...	3.0E-43	[2..159]	[15..160]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-40	[5..159]	[4..153]
gi\|11278912 - pir\|\|B81968 conserved hypothetical protein NMA0501 [imported] - Neisseria meningitidis (strain Z2491... gi\|15793500, gi\|... - gi\|7379245\|emb\|CAB83794.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187674...	2.0E-35	[25..159]	[1..128]
gi\|10173971, gi\|... - gi\|15613918\|ref\|NP_242221.1\| hypothetical protein BH1355 [Bacillus halodurans C-125], gi\|10173971\|db... gi\|25307006 - pir\|\|C83819 hypothetical protein BH1355 [imported] - Bacillus halodurans (strain C-125)	5.0E-35	[28..159]	[3..128]
YQEY_BACSU - Uncharacterized protein yqeY OS=Bacillus subtilis GN=yqeY PE=1 SV=1 YQEY_BACSU - Uncharacterized protein YqeY OS=Bacillus subtilis (strain 168) GN=yqeY PE=1 SV=1 gi\|221314788 - gi\|221314788\|ref\|ZP_03596593.1\| hypothetical protein BsubsN3_13807 [Bacillus subtilis subsp. subtili... gi\|221319711 - gi\|221319711\|ref\|ZP_03601005.1\| hypothetical protein BsubsJ_13728 [Bacillus subtilis subsp. subtilis... gi\|221323988 - gi\|221323988\|ref\|ZP_03605282.1\| hypothetical protein BsubsS_13862 [Bacillus subtilis subsp. subtilis...	2.0E-34	[28..159]	[3..129]
gi\|15075342 - gi\|15075342\|emb\|CAC46898.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966072 - gi\|15966072\|ref\|NP_386425.1\| hypothetical protein SMc01568 [Sinorhizobium meliloti 1021]	4.0E-34	[36..159]	[9..130]
gi\|17429236 - gi\|17429236\|emb\|CAD15924.1\| conserved hypothetical protein [Ralstonia solanacearum GMI1000] gi\|17546936 - gi\|17546936\|ref\|NP_520338.1\| hypothetical protein RSc2217 [Ralstonia solanacearum GMI1000]	4.0E-34	[28..157]	[3..126]
gi\|254936470 - gi\|254936470\|ref\|ZP_05268167.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes F6900] gi\|255023613 - gi\|255023613\|ref\|ZP_05295599.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes FSL J1-2... gi\|224500512 - gi\|224500512\|ref\|ZP_03668861.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes Finland ... gi\|224501592 - gi\|224501592\|ref\|ZP_03669899.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes FSL R2-5... gi\|217964386, gi... - gi\|217964386\|ref\|YP_002350064.1\| GatB/Yqey domain protein [Listeria monocytogenes HCC23], gi\|2173336... gi\|16803508 - gi\|16803508\|ref\|NP_464993.1\| hypothetical protein lmo1468 [Listeria monocytogenes EGD-e] gi\|25307017, gi\|... - pir\|\|AD1258 hypothetical protein lmo1468 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641... gi\|16800573 - gi\|16800573\|ref\|NP_470841.1\| hypothetical protein lin1505 [Listeria innocua Clip11262] gi\|25307019, gi\|... - pir\|\|AH1620 hypothetical protein homolog lin1505 [imported] - Listeria innocua (strain Clip11262), ... gi\|254827756 - gi\|254827756\|ref\|ZP_05232443.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes FSL N3-1... gi\|254898366 - gi\|254898366\|ref\|ZP_05258290.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes J0161] gi\|254912142 - gi\|254912142\|ref\|ZP_05262154.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes J2818] gi\|254829773 - gi\|254829773\|ref\|ZP_05234428.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes 10403S] gi\|254873730 - gi\|254873730\|ref\|ZP_05246440.1\| GatB/Yqey domain-containing protein [Listeria monocytogenes FSL N1-0...	2.0E-33	[27..159]	[2..129]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRQSIRPLV SNRLTFIRYN SSPAYTAAVS LLKGDLKKAM IAKDEMKKTA IRNMLSAIKN  60
   61 KEIALKGKSA DEYSLYDMYS KLISQRKDSI NEFLANKRDD LVAKEQGEMD IIKKYMDQLP 120
  121 VSSELDIDQN VKKLLDALKT KAGEKKVQIK EIMGEIDWKS LPTEWKTSPT AIKNSIVKQF 180
  181 KEIFK

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.43
Match:	1egyA
Description:	Cytochrome P450-ERYF
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits