YRC Public Data Repository - Protein Structure Prediction

Protein:	SAS5
Organism:	Saccharomyces cerevisiae
Length:	248 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAS5.

Description	E-value	Query Range	Subject Range
TAF14_YEAST - Transcription initiation factor TFIID subunit 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... TAF14 - Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes, involved in RNA polymerase II transcrip... gi\|190407829 - gi\|190407829\|gb\|EDV11094.1\| transcription initiation factor TFIID subunit 14 [Saccharomyces cerevisi...	294.0	[0..1]	[216..1]
TAF14_SCHPO - Transcription initiation factor TFIID subunit 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... tfg3 - transcription factor TFIIF complex subunit Tfg3	292.0	[0..4]	[214..3]
gi\|50294109, gi\|... - gi\|50294109\|ref\|XP_449466.1\| hypothetical protein CAGL0M02739g [Candida glabrata CBS138], gi\|4952878... gi\|49528780 - gi\|49528780\|emb\|CAG62442.1\| unnamed protein product [Candida glabrata]	266.0	[0..1]	[216..1]
gi\|44981540 - gi\|44981540\|gb\|AAS51325.1\| ACR099Cp [Ashbya gossypii ATCC 10895] gi\|44981540, gi\|... - gi\|45185785\|ref\|NP_983501.1\| ACR099Cp [Ashbya gossypii ATCC 10895], gi\|44981540\|gb\|AAS51325.1\| ACR09...	255.0	[0..1]	[216..1]
gi\|49642499\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50306779, gi\|... - gi\|50306779\|ref\|XP_453365.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642499\|emb\|CAH0046...	243.0	[0..1]	[216..1]
gi\|49646907, gi\|... - gi\|50547143\|ref\|XP_501041.1\| YALI0B18062p [Yarrowia lipolytica], gi\|49646907\|emb\|CAG83294.1\| unnamed... gi\|49646907 - gi\|49646907\|emb\|CAG83294.1\| YALI0B18062p [Yarrowia lipolytica]	207.0	[0..4]	[216..5]
orf19.798, orf19... - orf19.798 CGDID:CAL0002032 Assembly 19, Contig19-10076 (20849, 21559) CDS, translated using codon ta... gi\|46442816, gi\|... - gi\|68469824\|ref\|XP_720922.1\| hypothetical protein CaO19.798 [Candida albicans SC5314], gi\|68469585\|r... gi\|238882203 - gi\|238882203\|gb\|EEQ45841.1\| transcription initiation factor TFIID subunit 14 [Candida albicans WO-1]	195.0	[0..31]	[216..2]
gi\|67515603, gi\|... - gi\|67515603\|ref\|XP_657687.1\| hypothetical protein AN0083.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	192.0	[0..5]	[216..4]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSIEVTFR VKTQQVIIPE QNIRGNELPL RRWQMELLML DATGKEVEPT ILSKCIYHLH  60
   61 SSFKQPKRRL NSLPFFIKET GWGEFNLKIE CFFIGNAGKF SIEHDLTFED DAYAVDYTVD 120
  121 VPHEFSHLNS ELSKYFDLPW KVVSPEEEMS LRIADLPWIK SLALIDEDMM TDVVQMILN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.677781
Match:	PF03366
Description:	YEATS family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.360	N/A	N/A	d.17.4	NTF2-like
View	Download	0.360	N/A	N/A	d.17.4	NTF2-like
View	Download	0.343	N/A	N/A	d.107.1	Ran-binding protein mog1p
View	Download	0.311	N/A	N/A	c.51.2	TolB, N-terminal domain
View	Download	0.299	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.292	N/A	N/A	d.17.4	NTF2-like
View	Download	0.289	N/A	N/A	d.33.1	Bacterial protein-export protein SecB
View	Download	0.286	N/A	N/A	d.38.1	Thioesterase/thiol ester dehydrase-isomerase
View	Download	0.284	N/A	N/A	d.17.4	NTF2-like
View	Download	0.246	N/A	N/A	d.24.1	Pili subunits

Predicted Domain #2

Region A:
Residues: [180-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPAVQRAIEN HPRREQFFMF ITQLPDDLLM KIQAFLKLPN KNSTKQERTN FGSDAIHKDE  60
   61 PVKAHNKLK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.828	a.118.1	ARM repeat
View	Download	0.750	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.735	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.685	a.7.17	Description not found.
View	Download	0.677	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.612	a.118.1	ARM repeat
View	Download	0.424	c.5.1	MurCD N-terminal domain
View	Download	0.402	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View	Download	0.338	c.5.1	MurCD N-terminal domain
View	Download	0.321	a.65.1	Annexin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits