| Protein: | MPC54 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 464 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MPC54.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-49 | [10..455] | [196..663] |
|
|
1.0E-49 | [10..455] | [1185..1652] |
|
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9.0E-49 | [10..430] | [1179..1621] |
|
|
1.0E-48 | [10..459] | [68..536] |
|
Region A: Residues: [1-407] |
1 11 21 31 41 51
| | | | | |
1 MPEDTSYSNS FEDYYNNSHA ISPYKDSFYK EMTPSKPNVR FGDDDVNIFD QRKKVNEINK 60
61 NNTVKRSIPS SISTTITPNK SSLKSPRGKR ASKNSFDNET KLESKNETLK EVNDAVNRCY 120
121 ALCNIPTKHV SINSISDLAQ TFETLAVGIT HETNRKAECE RSKNAIDSLY YHEQLEKKEL 180
181 NEKSLQMAID HLLKVTKQNL RQADDGNKLK ETEALKSFIE EIEEVDDNKI SINSLQQQLL 240
241 EEKTANNILR RDYYKLQERG RRLCHEFQEL QDDYSKQMKQ KEYEVQKLKN EIKVLLNMND 300
301 NLKAEKAHYS QKEKQYFQKY TYIEKYMNHV KEEYNRKEDE CKKLNFIIDK SMKKIEHLER 360
361 SLQTQFTAQN SFSTAMIQEE GPKDAHLKDR YHKVKEFMEQ KLQTSKI
|
| Detection Method: |  |
| Confidence: | 16.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [408-464] |
1 11 21 31 41 51
| | | | | |
1 NDPSCSEAEA LDNVLCLIES SMKTLDKNSK CYPIATKKCI KYVTDSPRLK ENEHVTN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.500 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.547 | a.4.1 | Homeodomain-like |
| View | Download | 0.619 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.616 | a.30.1 | ROP protein |
| View | Download | 0.468 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.619 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.616 | a.30.1 | ROP protein |
| View | Download | 0.547 | a.4.1 | Homeodomain-like |
| View | Download | 0.500 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.481 | a.4.1 | Homeodomain-like |
| View | Download | 0.467 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.454 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.449 | a.2.7 | tRNA-binding arm |
| View | Download | 0.444 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.436 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.427 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.421 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.417 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.413 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.397 | a.4.1 | Homeodomain-like |
| View | Download | 0.396 | a.4.1 | Homeodomain-like |
| View | Download | 0.393 | a.4.1 | Homeodomain-like |
| View | Download | 0.378 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.376 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.375 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.351 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.334 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.318 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.305 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.297 | a.112.1 | Description not found. |
| View | Download | 0.295 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.294 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.294 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.293 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.291 | a.4.12 | TrpR-like |
| View | Download | 0.281 | a.4.1 | Homeodomain-like |
| View | Download | 0.266 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.265 | a.4.1 | Homeodomain-like |
| View | Download | 0.244 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.239 | a.4.1 | Homeodomain-like |
| View | Download | 0.237 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.232 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.230 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.223 | a.2.3 | Chaperone J-domain |
| View | Download | 0.217 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | g.39.1 | Glucocorticoid receptor-like (DNA-binding domain) |
| View | Download | 0.217 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.209 | a.5.2 | UBA-like |
| View | Download | 0.202 | a.74.1 | Cyclin-like |
