| Protein: | YRR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 810 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRR1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..810] | [1..810] |
|
|
1.0E-75 | [38..574] | [8..523] |
|
|
2.0E-74 | [20..608] | [6..612] |
|
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1.0E-73 | [41..612] | [26..605] |
|
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2.0E-73 | [11..573] | [13..576] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MKRRSDALLG SFQATNVTPP SDNSNSTAGG ANGSNSGTPT STSGKKRNKL IKSCGFCRRR 60
61 KLRCDQQKPM CSTCISRNLT TCQYAEEFNK NIEKKATYGP YPNADLLKKV EELENKIRIL 120
121 EAEKNTNSSA SSMYTSPNFP P
|
| Detection Method: |  |
| Confidence: | 67.315398 |
| Match: | 1hwtD_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [142-249] |
1 11 21 31 41 51
| | | | | |
1 LGTSVGRGST ETSSPLPDGV INPYADRYYL QSKHSGRSTL YGPTSMRTQI ANSNWGFIEK 60
61 YKQLWAKVKV ERNKWKQNNQ KTMCRELGLL DESDWQPDPL IKQICRFL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.449 | b.55.1 | PH domain-like |
| View | Download | 0.462 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.428 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.368 | d.110.4 | SNARE-like |
| View | Download | 0.462 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.449 | b.55.1 | PH domain-like |
| View | Download | 0.428 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.393 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.393 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.368 | d.110.4 | SNARE-like |
| View | Download | 0.368 | a.7.8 | GAT domain |
| View | Download | 0.347 | d.93.1 | SH2 domain |
| View | Download | 0.344 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.324 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.313 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.304 | a.7.1 | Spectrin repeat |
| View | Download | 0.289 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.284 | a.74.1 | Cyclin-like |
| View | Download | 0.254 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.251 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.237 | d.224.1 | SufE-like |
| View | Download | 0.223 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.223 | c.23.1 | CheY-like |
| View | Download | 0.218 | a.7.7 | BAG domain |
| View | Download | 0.207 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.203 | d.110.4 | SNARE-like |
| View | Download | 0.202 | a.47.2 | t-snare proteins |
|
Region A: Residues: [250-581] |
1 11 21 31 41 51
| | | | | |
1 PSYNKALSIL DDFFNDGACN EINVILDKAK VRRDFLDYFM PEKEVKAEGD RSIVYILSNP 60
61 KKNYYKAAVI LLILCLKYFH TDVPTPIEKF FTLLKGASTA KVFYIERAQM LILFYYHRET 120
121 YSFGGDGSDL VNINECLVTT VTTIGLHLNI RETFKEHEVF MGSIESLENV WLMAIFIDYN 180
181 ISCNVGRPLL INKFYLDENQ DHCILNSKSK TYEGKLKRYL KLTRPMLLTL YDRDKFPDLK 240
241 AYSKRIINFV EEELGPLGHY TGENISEEVP LRESRILSMA VGLLLSFYAL IHSVLKVRNI 300
301 ESKNNTFQLV LINFSIIVNT TIRCYRIDKA LY
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [582-810] |
1 11 21 31 41 51
| | | | | |
1 PEKFEASNPH LPPHMALSMS LTAGLFSKTL VFFCSLIYFK LTLFENGLCL SNDMEVGWSD 60
61 LTKLTVPLDK DLSLGTAMSL YSSIFDRLFT VGNKELIRTM HRSSQFVIEL AIERTYRTIL 120
121 GNVIEFRKLT EETWLAQIKQ ELDPQSDNPS SEAKIVSDRQ RDLSLAVPTP TPSIIPMLPS 180
181 PGETKNHAKS QSEIIQMLTD EFWANYNSGW EELINQSEFS TLFDDYKDN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [589-810] |
1 11 21 31 41 51
| | | | | |
1 NPHLPPHMAL SMSLTAGLFS KTLVFFCSLI YFKLTLFENG LCLSNDMEVG WSDLTKLTVP 60
61 LDKDLSLGTA MSLYSSIFDR LFTVGNKELI RTMHRSSQFV IELAIERTYR TILGNVIEFR 120
121 KLTEETWLAQ IKQELDPQSD NPSSEAKIVS DRQRDLSLAV PTPTPSIIPM LPSPGETKNH 180
181 AKSQSEIIQM LTDEFWANYN SGWEELINQS EFSTLFDDYK DN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
