YRC Public Data Repository - Protein Structure Prediction

Protein:	MDM32
Organism:	Saccharomyces cerevisiae
Length:	653 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM32.

Description	E-value	Query Range	Subject Range
MDM32_YEAST - Mitochondrial distribution and morphology protein 32 OS=Saccharomyces cerevisiae (strain ATCC 204508... MDM32 - Mitochondrial inner membrane protein with similarity to Mdm31p, required for normal mitochondrial mo...	970.0	[0..32]	[653..1]
gi\|238879227 - gi\|238879227\|gb\|EEQ42865.1\| mitochondrial distribution and morphology protein 31 [Candida albicans W... gi\|3859697, gi\|2... - gi\|3859697\|emb\|CAA21972.1\| unknown possible membrane protein [Candida albicans], pir\|\|T52152 probabl...	513.0	[0..121]	[556..84]
orf19.10504, orf... - orf19.2987 CGDID:CAL0006133 Assembly 19, Contig19-10163 (120450, 118663) CDS, reverse complemented, ... gi\|68469397, gi\|... - gi\|68469397\|ref\|XP_721213.1\| potential mitochondrial biogenesis factor [Candida albicans SC5314], gi...	513.0	[0..121]	[556..84]
gi\|44980800 - gi\|44980800\|gb\|AAS50705.1\| ABL066Cp [Ashbya gossypii ATCC 10895] gi\|45185164, gi\|... - gi\|45185164\|ref\|NP_982881.1\| ABL066Cp [Ashbya gossypii ATCC 10895], gi\|44980800\|gb\|AAS50705.1\| ABL06...	502.0	[0..45]	[652..4]
gi\|50420567, gi\|... - gi\|50420567\|ref\|XP_458820.1\| hypothetical protein DEHA0D09042g [Debaryomyces hansenii CBS767], gi\|49...	480.0	[0..121]	[652..112]
gi\|49528974 - gi\|49528974\|emb\|CAG62636.1\| unnamed protein product [Candida glabrata] gi\|50294498, gi\|... - gi\|50294498\|ref\|XP_449660.1\| hypothetical protein CAGL0M07183g [Candida glabrata CBS138], gi\|4952897...	470.0	[0..103]	[636..74]
mdm31 - mitochondrial inner membrane protein Mdm31 MDM31_SCHPO - Mitochondrial distribution and morphology protein 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	470.0	[0..116]	[539..94]
gi\|49640854 - gi\|49640854\|emb\|CAH02115.1\| KLLA0B04246p [Kluyveromyces lactis] gi\|49640854, gi\|... - gi\|50303561\|ref\|XP_451722.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640854\|emb\|CAH0211...	419.0	[0..95]	[556..78]
gi\|83767113 - gi\|83767113\|dbj\|BAE57252.1\| unnamed protein product [Aspergillus oryzae] gi\|169769569 - gi\|169769569\|ref\|XP_001819254.1\| hypothetical protein [Aspergillus oryzae RIB40]	409.0	[0..118]	[649..62]

Back

Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIKVDSRFA SRSIKTKGTY RLSGGGRFIK FMLITRLRVP TIKRPLLPIT SHLVRHCIRT  60
   61 YVATNHGNVR PFITPYKSSL PVRCLIAQRH IRTFPSNDKF TTKAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [106-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIETILLRKN NEREFKQSLL ADAKNFQERF KINLKWILIK NNRPFSLNEI SIIASWLILS  60
   61 QILWLILSTT TFISFYLFVI NSVFSQEYIH EKKIYERLLK WLLKDHKCSN QDLEITFSPE 120
  121 DKASMLVLSP DWESNSILIK RLNVRDEILD LDLKFHHINL NVSLKNWLLG RGLITNVSIY 180
  181 GIRGCLNLSN FINLVNSFQG DQKTENFLKT LNNVEITDSE ILLKQSLSAQ ETPSLKFSIY 240
  241 NLSLPRLRLN HFISDILSAK TFSGSINNSL FNLFKRQQKL TAVIENNNKN RMASSKFDFT 300
  301 DNNQENYRTV THQDDPNYVT TLRLNFININ DLKFNGDGKF NWLKDGQVEI LADIMLTNST 360
  361 SHLSSESKYA VVDLKVTCRD LKTTFPQEPP VLSTGDSIVS LDELKPIITF INSYEGMANP 420
  421 ILKDFSENER LTNSIIW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [543-653]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSPNVSINRQ RKSYPLTTKV TSNSTKEIIK FHNQPNTNAN EIVLRCKMVK NLSDLQLINI  60
   61 NQILDQITME LYVDLTKIVE DWEFKNKNDW MKQWGTTFAS QLLLFGFGAM V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.888	a.177.1	Sigma2 domain of RNA polymerase sigma factors

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits