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View Structure Prediction Details

Protein: YOR142W-A, YPR158W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR142W-A, YPR158W-A.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
566.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 69.958607
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTKKYVRPP PMLTSPNDFP NWVKTYIKFL QNSNLGGIIP TVNGKPVRPI TDDELTFLYN  60
   61 TFQIFAPSQF LPTWVKDILS VDYTDIMKIL SKSIEKMQSD TQEANDIVTL ANLQYNGSTP 120
  121 ADAFETKVTN IIDRLNNNGI HINNKVACQL IMRGLSGEYK FLRYTRHRHL N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [334-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAELFLDI HAIYEEQQGS RNSKPNYRRN PSDEKNDSRS YTNTTKPKVI ARNPQKTNNS  60
   61 KSKTARAHNV STSNNSPSTD NDSISKSTTE PIQLNNKHDL HLRPETY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle