YRC Public Data Repository - Protein Structure Prediction

Protein:	AFI1
Organism:	Saccharomyces cerevisiae
Length:	893 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AFI1.

Description	E-value	Query Range	Subject Range
gi\|44981688 - gi\|44981688\|gb\|AAS51438.1\| ACR212Cp [Ashbya gossypii ATCC 10895] gi\|44981688, gi\|... - gi\|45185898\|ref\|NP_983614.1\| ACR212Cp [Ashbya gossypii ATCC 10895], gi\|44981688\|gb\|AAS51438.1\| ACR21...	441.0	[0..26]	[672..49]
gi\|49643204 - gi\|49643204\|emb\|CAG99156.1\| KLLA0E02729p [Kluyveromyces lactis] gi\|49643204, gi\|... - gi\|50308137\|ref\|XP_454069.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643204\|emb\|CAG9915...	432.0	[0..13]	[864..16]
gi\|1668789 - gi\|1668789\|emb\|CAA60863.1\| unnamed protein product [Saccharomyces cerevisiae]	216.0	[0..1]	[100..1]
gi\|90304132, gi\|... - gi\|90304132\|gb\|EAS33763.1\| hypothetical protein CIMG_04787 [Coccidioides immitis RS], gi\|119189479\|r...	67.0	[0..20]	[248..82]
gi\|145010396, gi... - gi\|39939844\|ref\|XP_359459.1\| hypothetical protein MGG_05318 [Magnaporthe grisea 70-15], gb\|EAA52626....	67.0	[0..26]	[248..133]
gi\|49646173, gi\|... - gi\|50545541\|ref\|XP_500308.1\| YALI0A20900p [Yarrowia lipolytica], gi\|49646173\|emb\|CAG84246.1\| unnamed... gi\|49646173 - gi\|49646173\|emb\|CAG84246.1\| YALI0A20900p [Yarrowia lipolytica]	56.0	[0..139]	[490..48]
gi\|30421149 - gi\|30421149\|gb\|AAP31022.1\| MesA [Emericella nidulans]	54.0	[0..20]	[246..71]
gi\|111071029, gi... - gi\|169595822\|ref\|XP_001791335.1\| hypothetical protein SNOG_00654 [Phaeosphaeria nodorum SN15], gi\|11...	54.0	[0..26]	[244..110]
gi\|60474733 - gi\|60474733\|gb\|EAL72670.1\| hypothetical protein DDB0201856 [Dictyostelium discoideum] gi\|60474733, gi\|... - gi\|66825867\|ref\|XP_646288.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60474733\|gb\|EAL...	51.0	[0..161]	[252..437]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRELNNSI SNRSIENESF PFERPNVSYI ISAEFDNKLG PILKHQYPKD IPGFNQFSHE  60
   61 QRNGNTSVSM NLASLMIPSS IERNPGKQDI TVFTLYYNKF TQNYQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.231	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.218	N/A	N/A	a.182.1	GatB/YqeY domain

Predicted Domain #2

Region A:
Residues: [106-655]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFPVPKDPRF SFNLHHREQS DGSVTNSIYY DAENHQDAKN NRYTIVLEDD ELECQEVQNN  60
   61 QKAIDNEPLF FINVANTVLD TTNDRGAVIK SIAIGTPLKT FFAFKNIIVL VLDLYMKAPT 120
  121 QAAATDILLD CFNMLNSIDL TLINDIHSKS SIQEVLHSIH DESIITKVFL DPDSTLKKLF 180
  181 CINGFDTKDK YGNIVTFHDQ LIQYHFTRFQ PKTLPPFLLK IPLQFNMIRR EPIYIENDYN 240
  241 ELVLKFLDKF VPYLLKAGQK VNAWKLVINS TKLSKEDLCA FILSLANITA TYASDPQSYF 300
  301 KGNAALIFPY MDISLVDGLR AYVASNSDFV GCFAIIGTAN PIFRYQLDIW DYYYDVDEGV 360
  361 FYENNSPEKE KPDTVAEVKI GPNPLRKIFN RPHFSTNAVN ESQVNLGQKL FSLLIDEYHD 420
  421 SDTIMSVLRR LNVLQLENLL DALKRREIPP NIALKDEYIM FYKDFFIFPE FFDYFTLHSI 480
  481 ELLSNLDNCL FSLGNTCQLF STEQIYSQLS QILDIVKELF RMVSVSRTNI EKFLNACLNY 540
  541 SPFKILPTAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [656-893]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHGDNISRWS FESEVRQGFD NFNSYMGIEK DPHGVIVSAI DLFTQIYSFD ILAFFLTFIT  60
   61 KESGQDLPFT KSLSRRRTYL TRIAQSSSLR QFLQLSTRPN IRILGGNGQG TGNSNYPEFT 120
  121 NASSVISPKL RASPLLERRA SKICYAITKL LYRLECHPIG MALLKKYLHN QLREAYLESK 180
  181 RHFISKKGDS TNTSSTIASS SFAGASVPLS SNESGMLNGL KQINEQQEST LETTQKED

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	7.1
Match:
Description:	No description for 1l9uD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits