| Protein: | RGA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1007 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGA1.
| Description | E-value | Query Range |
Subject Range |
|
|
886.0 | [0..1] | [1007..1] |
|
|
486.0 | [0..196] | [1002..1072] |
|
|
473.0 | [0..194] | [1002..1101] |
|
|
444.0 | [0..11] | [1005..17] |
|
|
429.0 | [0..145] | [1002..1085] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MASTAPNEQF PSCVRCKEFI TTGHAYELGC DRWHTHCFAC YKCEKPLSCE SDFLVLGTGA 60
61 LICFDCSDSC
|
| Detection Method: |  |
| Confidence: | 35.491979 |
| Match: | 1b8tA |
| Description: | Cysteine-rich (intestinal) protein, CRP, CRIP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [71-130] |
1 11 21 31 41 51
| | | | | |
1 KNCGKKIDDL AIILSSSNEA YCSDCFKCCK CGENIADLRY AKTKRGLFCL SCHEKLLAKR 60
61
|
| Detection Method: | |
| Confidence: | 35.491979 |
| Match: | 1b8tA |
| Description: | Cysteine-rich (intestinal) protein, CRP, CRIP |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [131-238] |
1 11 21 31 41 51
| | | | | |
1 KYYEEKKRRL KKNLPSLPTP VIDNGHTDEV SASAVLPEKT FSRPASLVNE IPSGSEPSKD 60
61 IETNSSDIVP HFITGYNDSD DNSGSSKFGS NVSIDVIGPE ENSTEHVN
|
| Detection Method: | |
| Confidence: | 11.62 |
| Match: | |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [239-616] |
1 11 21 31 41 51
| | | | | |
1 DDVKEEAEAP SANMSLNVAT DPTLSCKEPP SHSRNLLNKT PLRNSSGQYL AKSPSSYRQG 60
61 IIVNDSLEES DQIDPPNNSS RNASELLTSV LHSPVSVNMK NPKGSNTDIF NTGEISQMDP 120
121 SLSRKVLNNI VEETNALQRP VVEVVKEDRS VPDLAGVQQE QAEKYSYSNN SGKGRKISRS 180
181 LSRRSKDLMI NLKSRATGKQ DSNVKLSPAS KVTSRRSQDL MRDNDSHTGL DTPNSNSTSL 240
241 DILVNNQKSL NYKRFTDNGT LRVTSGKETA LEEQKNHSFK SPSPIDHLLQ SPATPSNVSM 300
301 YRTPPLDSSL TFDRRNGSSY SNQNYSIPSW QKTPKTQLEN SDNFEEQKET LYENSESRND 360
361 PSLDKEIVTA EHYLKQLK
|
| Detection Method: | |
| Confidence: | 11.89 |
| Match: | |
| Description: | No description for 1i3qA was found. |
|
Region A: Residues: [617-739] |
1 11 21 31 41 51
| | | | | |
1 INLKELESQR EELMKEITEM KSMKEALRRH IESYNSEKNK LYLDSNELSN NPPMINEISL 60
61 GESPPVKHVA TASSVARSSV KPKFWKFFSS AKPQTEQSIQ GVSTNNTNSI VKSAPVLLSA 120
121 PSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [740-878] |
1 11 21 31 41 51
| | | | | |
1 GSNSGRLEIS PPVLQNPNEF SDVRLVPIEN DANMGQSKDG EEYLDGSNLY GSSLVARCNY 60
61 ENNEIPMILS VCIDFIESDE ENMRSEGIYR KSGSQLVIEE IEKQFSAWKV QQNTETPNIL 120
121 TEQDLNVVTG VLKRYLRKL
|
| Detection Method: | |
| Confidence: | 191.29073 |
| Match: | 1am4A |
| Description: | p50 RhoGAP domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [879-1007] |
1 11 21 31 41 51
| | | | | |
1 PNPIFTFQIY EPLMRLVKSK KMMENLPFVG GKLSLEAKNS DTYMSSKSAL KNILEDLPRE 60
61 HYRVLRVLSE HIEKVTRYSH WNRMTLYNLA LVFAPGLIRD FSGEKDIIDM KERNYIVAFI 120
121 FGNYKDILT
|
| Detection Method: | |
| Confidence: | 191.29073 |
| Match: | 1am4A |
| Description: | p50 RhoGAP domain |
| Matching Structure (courtesy of the PDB): |
|
