YRC Public Data Repository - Protein Structure Prediction

Protein:	RTC5
Organism:	Saccharomyces cerevisiae
Length:	567 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTC5.

Description	E-value	Query Range	Subject Range
RTC5_YEAS1 - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RTC5 PE=3 ... RTC5_YEAS2 - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain JAY291) GN=RTC5 PE=3 S... RTC5_YEAST - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... RTC5 - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytopla... RTC5_YEAS8 - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise ...	0.0	[1..567]	[1..567]
RTC5_SCHPO - Restriction of telomere capping protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... SPBC21.02 - TLDc domain protein 2	0.0	[202..521]	[196..505]
gi\|29028740, gi\|... - gi\|29028740\|gb\|AAO64749.1\| At5g39590/MIJ24_60 [Arabidopsis thaliana], gi\|15010732\|gb\|AAK74025.1\| AT5...	1.0E-74	[315..556]	[319..531]
CE26986 - status:Confirmed UniProt:Q965X2 protein_id:AAK68886.1	2.0E-6	[275..556]	[163..376]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSSSISSS NEEGSSHSKK FTNSKDILAY FNNKAQQQVT IPELVSFKGN LQIEDLNTPI  60
   61 SHKALCNSLY FPQNHAMIVG IVTNMLRVLS NFPLMKSSYE PITGYGLLKC ILLLNRARCA 120
  121 KFLKTKSYDQ LKLLFISLSL QKTDKEELSE ESENDGNKEL TIKQIITGFD DVDTEMLCIP 180
  181 ADFMLQFLTW LLILTVDCPT TNSKLDNTET HDQWGNFKVS ALNLLRTMNP DVVGDIESHS 240
  241 ITFQQFSTAI RTVM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNLLKPLENL MEHFFYLQHD LVDHDTNLSS IQDSKVMTPA LLAQLSTGLP KELFIHKLQS  60
   61 LYIGRKSGFS MRSLQAKVFK WMAPSILVVS GMRITNSEEY AAEKNPRYRH FLEEFPKLKE 120
  121 SDQMMDASHL NKRKTTFAVY IDDPWKVTNK DYFGDLNTRI IEISPRQDIY KVNQKGTIYF 180
  181 NTIGGGIGIG DKQPLIKPAS KRYIPGNVSL TFDSTLEFAV FRNTGYGGSL DPGLLSMERK 240
  241 EENSPYELHF LIQDVEVWGC GGEKELEEQI KQLEWEEAES KRRQQINLRS LGEDRALLEM 300
  301 AGLVGQHQGG GSM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits