YRC Public Data Repository - Protein Structure Prediction

Protein:	TRS33
Organism:	Saccharomyces cerevisiae
Length:	268 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRS33.

Description	E-value	Query Range	Subject Range
TRS33_YEAST - Trafficking protein particle complex subunit 33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... gi\|190407444 - gi\|190407444\|gb\|EDV10711.1\| transport protein particle 33 kDa subunit [Saccharomyces cerevisiae RM11... gi\|151945737 - gi\|151945737\|gb\|EDN63978.1\| TRapp subunit [Saccharomyces cerevisiae YJM789] TRS33 - One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates... gi\|207341164 - gi\|207341164\|gb\|EDZ69294.1\| YOR115Cp-like protein [Saccharomyces cerevisiae AWRI1631]	4.0E-96	[1..268]	[1..268]
gi\|4959712 - gi\|4959712\|gb\|AAD34459.1\|AF136010_1 SPP30 [Solanum chacoense]	9.0E-58	[48..258]	[3..186]
gi\|21555061, gi\|... - gi\|9759528\|dbj\|BAB10994.1\| unnamed protein product [Arabidopsis thaliana], gi\|28466921\|gb\|AAO44069.1...	1.0E-57	[49..258]	[4..186]
gi\|90108935, gi\|... - gi\|90108935\|pdb\|2C0J\|B Chain B, Crystal Structure Of The Bet3-Trs33 Heterodimer, gi\|3688090\|gb\|AAC62...	4.0E-50	[104..257]	[15..160]
TRS31_SCHPO - Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=t... trs31 - TRAPP complex subunit Trs31	1.0E-48	[34..258]	[18..201]
TPC6B_MOUSE - Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1	3.0E-48	[104..256]	[14..157]
CE22619 - status:Partially_confirmed UniProt:Q9NA81 protein_id:CAB55019.1	3.0E-45	[52..258]	[1..173]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTHSNNVG HPQSSPQGPL TEQQRAQQQY QIFENSLPKV SQSVYQMLLN EMVPLAMGIE  60
   61 RQISGDVISS DSNVTSENGN INNMIKRLKI EEHHTVDIIR SHNLIHELYK ADEEEKEKVL 120
  121 ARLRNIGFQI GLKLSELLIF SNNPNLKFKE MDLLLIMKFI CRDVWKQIFG KQIDNLKTNH 180
  181 RGTFYLLDYD YRPIQSFSLE EDAKNEELKM IEPFLEIPVG IIRGVLSSLG YSSEEVICLA 240
  241 SFIDRPTDRP KTAFPKGVSF HVQVTMPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [111-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADEEEKEKVL ARLRNIGFQI GLKLSELLIF SNNPNLKFKE MDLLLIMKFI CRDVWKQIFG  60
   61 KQIDNLKTNH RGTFYLLDYD YRPIQSFSLE EDAKNEELKM IEPFLEIPVG IIRGVLSSLG 120
  121 YSSEEVICLA SFIDRPTDRP KTAFPKGVSF HVQVTMPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	2j3tB
Description:	No description for 2j3tB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits