YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR111W
Organism:	Saccharomyces cerevisiae
Length:	232 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR111W.

Description	E-value	Query Range	Subject Range
YOR111W - Putative protein of unknown function YO111_YEAST - Maf-like protein YOR111W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR111W PE=1 SV...	2.0E-79	[1..232]	[1..232]
gi\|606188\|gb\|AAA... - ORF_f217; orfE of ECMRED, uses 2nd start [Escherichia coli] gi\|606188 - gi\|606188\|gb\|AAA58051.1\| ORF_f217; orfE of ECMRED, uses 2nd start [Escherichia coli]	3.0E-60	[4..227]	[6..204]
gi\|4757794, gi\|3... - gi\|4757794\|ref\|NP_004183.1\| acetylserotonin O-methyltransferase-like [Homo sapiens], gi\|3808148\|emb\|...	5.0E-60	[11..230]	[6..213]
MAF_BACHD - Septum formation protein Maf OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / J... MAF_BACHD - Septum formation protein Maf OS=Bacillus halodurans GN=maf PE=3 SV=1	4.0E-58	[18..231]	[1..187]
gi\|11280090 - pir\|\|B81925 hypothetical protein NMA0802 [imported] - Neisseria meningitidis (strain Z2491 serogroup... Y802_NEIMA - Maf-like protein NMA0802 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=NMA08... Y802_NEIMA - Maf-like protein NMA0802 OS=Neisseria meningitidis serogroup A GN=NMA0802 PE=3 SV=1	9.0E-58	[18..230]	[1..193]
gi\|11280091 - pir\|\|C81181 Maf/YceF/YhdE family protein NMB0598 [imported] - Neisseria meningitidis (strain MC58 se... Y598_NEIMB - Maf-like protein NMB0598 OS=Neisseria meningitidis serogroup B GN=NMB0598 PE=3 SV=1 Y598_NEIMB - Maf-like protein NMB0598 OS=Neisseria meningitidis serogroup B (strain MC58) GN=NMB0598 PE=3 SV=1	1.0E-57	[18..230]	[1..193]
Y1268_PASMU - Maf-like protein PM1268 OS=Pasteurella multocida (strain Pm70) GN=PM1268 PE=3 SV=1 YC68_PASMU, Y126... - (Q9CLG6) Maf-like protein PM1268, Maf-like protein PM1268 OS=Pasteurella multocida GN=PM1268 PE=3 SV...	4.0E-57	[20..232]	[5..199]
Y6452_RHILO - Maf-like protein mll6452 OS=Rhizobium loti (strain MAFF303099) GN=mll6452 PE=3 SV=1 Y6452_RHILO, YSE... - (Q989F1) Maf-like protein mll6452, Maf-like protein mll6452 OS=Rhizobium loti GN=mll6452 PE=3 SV=1	2.0E-56	[19..232]	[5..199]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNSQLPPD VIGFICSKYD IILASTSPRR YEILHDIMGI TDLKTMVSTF EENLDKMNYS  60
   61 TDPIGYVCDT SWHKAQNIIE ILTDYEDENP NEIDKPKLII CADTIIIDKS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [135-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEPVNVVTAV TLIKWYGREN FELVPFRDET KV

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [205-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIEGDYYNVV GLPLNKTFKG LYAEANSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	198.917458
Match:	1ex2A_
Description:	Maf protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [111-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRIYEKPKTK EVQKKFLMKF CYED

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [167-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFDNKIPLRI LEEYVESGDG LEVGGGFKIQ GQGAILIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	198.917458
Match:	1ex2A_
Description:	Maf protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits