| Protein: | TMA46 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 401 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA46.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [62..381] | [44..363] |
|
|
1.0E-82 | [57..337] | [1..281] |
|
|
1.0E-81 | [57..310] | [1..265] |
|
|
6.0E-68 | [57..372] | [1..283] |
|
|
3.0E-66 | [57..372] | [1..283] |
|
|
5.0E-64 | [61..372] | [7..280] |
|
|
8.0E-49 | [60..345] | [6..226] |
|
Region A: Residues: [1-401] |
1 11 21 31 41 51
| | | | | |
1 MIMKKFLFPS DELVKIDNIS FFNQCVLLFL ESKGSHSISK PLGFTHIKSQ ESYISKMPPK 60
61 KGKQAQAAGK KKDNVDKTFG MKNKNRSTKV QKYIKQVQSQ SDPKKEEMRL KKLEEKKRRE 120
121 AEEAERRALF NPVADQRVRA GVDPKSMVCA LFKLGNCNKG AKCKFSHDLN VGRRMEKKDL 180
181 YQDTRSEKEN DTMDNWDEEK LRKVILSKHG NPKTTTDKVC KYFIEAVENG KYGWFWICPN 240
241 GGDKCMYRHS LPEGFVLKTN EQKRLERESL EKQPKITLEE FIETERGKLD KSKLTPITIA 300
301 NFAQWKKDHV IAKINAEKKL SSKRKPTGRE IILKMSAENK SFETDNADMP DDVTQGSAWD 360
361 LTEFTDALKK ADHQDDGGIK DYGDGSNPTF DIKKANSATL A
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [130-292] |
1 11 21 31 41 51
| | | | | |
1 FNPVADQRVR AGVDPKSMVC ALFKLGNCNK GAKCKFSHDL NVGRRMEKKD LYQDTRSEKE 60
61 NDTMDNWDEE KLRKVILSKH GNPKTTTDKV CKYFIEAVEN GKYGWFWICP NGGDKCMYRH 120
121 SLPEGFVLKT NEQKRLERES LEKQPKITLE EFIETERGKL DKS
|
| Detection Method: | |
| Confidence: | 1.64 |
| Match: | 2cqeA |
| Description: | Solution Structure of the Zinc-finger domain in KIAA1064 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [293-401] |
1 11 21 31 41 51
| | | | | |
1 KLTPITIANF AQWKKDHVIA KINAEKKLSS KRKPTGREII LKMSAENKSF ETDNADMPDD 60
61 VTQGSAWDLT EFTDALKKAD HQDDGGIKDY GDGSNPTFDI KKANSATLA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.303 | a.24.4 | Hemerythrin |
| View | Download | 0.272 | a.22.1 | Histone-fold |
| View | Download | 0.270 | a.25.1 | Ferritin-like |
| View | Download | 0.262 | a.22.1 | Histone-fold |
| View | Download | 0.231 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
