| Protein: | TCB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1186 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1186] | [1..1186] |
|
|
0.0 | [23..1184] | [87..1260] |
|
|
0.0 | [14..1177] | [53..1211] |
|
|
0.0 | [115..930] | [62..871] |
|
|
0.0 | [115..930] | [20..839] |
|
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0.0 | [115..779] | [52..760] |
|
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0.0 | [115..950] | [42..960] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MAKEDTGVTA PKKPETAQVA NINGIDKLEP PKTKEETESS KSVSSEKAAH ASDESFKRSI 60
61 HEASYVGWKQ IGGWEDKDEL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.467 | 0.911 | mitochondrion | a.3.1 | Cytochrome c |
| View | Download | 0.407 | 0.911 | mitochondrion | a.2.3 | Chaperone J-domain |
| View | Download | 0.298 | 0.911 | mitochondrion | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.467 | 0.911 | mitochondrion | a.3.1 | Cytochrome c |
| View | Download | 0.407 | 0.911 | mitochondrion | a.2.3 | Chaperone J-domain |
| View | Download | 0.325 | 0.911 | mitochondrion | a.3.1 | Cytochrome c |
| View | Download | 0.325 | 0.911 | mitochondrion | a.3.1 | Cytochrome c |
| View | Download | 0.323 | 0.911 | mitochondrion | a.3.1 | Cytochrome c |
| View | Download | 0.298 | 0.911 | mitochondrion | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.264 | 0.911 | mitochondrion | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
|
Region A: Residues: [81-370] |
1 11 21 31 41 51
| | | | | |
1 TLDDELMDMT RETFLDNIIP DSLYGDWYHS VAIFFIGGVA SFALGHYKFS MGSAFFVIVI 60
61 TSLLYRTSAK KYRGSIRELV QKEFTVQKVE NDYESLEWLN AFLDKYWPIL EPSVSQLIVQ 120
121 QANEQMATNE AIPKFITQLW IDELTLGVKP PRVDLVKTFQ NTASDVVVMD WGISFTPHDL 180
181 CDMSAKQVRN YVNELAVVKA KIFGITIPVS VSDIAFKAHA RVKFKLMTPF PHVETVNIQL 240
241 LKVPDFDFVA TLFGRSIFNW EILAIPGLMT LIQKMAKKYM GPILLPPFSL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [371-506] |
1 11 21 31 41 51
| | | | | |
1 QLNIPQLLSG SNLSIGILEI TVKNAKGLKR TSSILNESID PYLSFEFNDI SIAKTRTVRD 60
61 TLNPVWDETL YVLLNSFTDP LTISVYDKRA KLKDKVLGRI QYNLNTLHDK TTQRNLKAQF 120
121 LRNSKPVGEL TFDLRF
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1gmiA_ |
| Description: | Domain from protein kinase C epsilon |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [507-640] |
1 11 21 31 41 51
| | | | | |
1 FPTLEEKKLP DGSVEELPDL NTGIAKVVVE EGSRFAEEEQ KVTAYVEVYL NAKLVLTTGK 60
61 ATDTGTLKWN SDYEAVIADR RKTRYKFVVK DGKGEEIGST IQTLNDLIDR SQVNKNLIPL 120
121 KNQKGDIKIT TYWR
|
| Detection Method: | |
| Confidence: | 118.373389 |
| Match: | 1dqvA_ |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [641-791] |
1 11 21 31 41 51
| | | | | |
1 PVRLEIGSNS VAYTPPIGAI RVFIEKANDL RNLEKFGTID PYCKVLVNGL SKGRTDFKSQ 60
61 TLNPVWNQVI YVAVTSPNQR ITLQCMDVET VNKDRSLGEF NVNVQDLFKK DENDKYEETI 120
121 DEKAKVGRLV MPKKKPKGTI TYYTSFYPAL P
|
| Detection Method: | |
| Confidence: | 118.373389 |
| Match: | 1dqvA_ |
| Description: | Synaptogamin I |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [792-930] |
1 11 21 31 41 51
| | | | | |
1 VLTLEEIQDL DKVNKKKKAL ELRKSAIDEK KISKEDKAKF DQEWNEVKEL EDMYSNRQKL 60
61 DLPELLQYNQ GVLAVTVLNG ELPDSGLYVQ AFFDDNGHPR FVSPRIPSRI VKNGWSGDVI 120
121 IKELDKSITT FRVAKNKNY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [931-1130] |
1 11 21 31 41 51
| | | | | |
1 NRVEKCVCEV ELPTQELVKN CYYKPSILHL SGEGSAKLML QISWFPIDTK QLPANDLITN 60
61 SGDLTIMSRS AENLIASDLN GYSDPYLKYY INNEEDCAYK TKVVKKTLNP KWNDEGTIQI 120
121 NNRLNDVLRI KVMDWDSTSA DDTIGTAEIP LNKVKVEGTT ELDVPVEGLE NAGQDGGMLH 180
181 LAFSFKPRYT ISVSKREKKV
|
| Detection Method: | |
| Confidence: | 117.325697 |
| Match: | 1dsyA_ |
| Description: | C2 domain from protein kinase c (alpha) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1131-1186] |
1 11 21 31 41 51
| | | | | |
1 GDIASKGLGT GLKAGTTVIG GGVGAIGKIK KGVFGGLGSL TNHKKNHEMG EEETKF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.395 | a.4.1 | Homeodomain-like |
| View | Download | 0.391 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.362 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.515 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.319 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.291 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.289 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.289 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.272 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | a.4.1 | Homeodomain-like |
| View | Download | 0.205 | a.15.1 | TAF(II)230 TBP-binding fragment |
| View | Download | 0.201 | a.135.1 | Tetraspanin |
