YRC Public Data Repository - Protein Structure Prediction

Protein:	RTS2
Organism:	Saccharomyces cerevisiae
Length:	232 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTS2.

Description	E-value	Query Range	Subject Range
RTS2 - Basic zinc-finger protein, similar to human and mouse Kin17 proteins which are chromatin-associated ... RTS2_YEAST - Zinc finger protein RTS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTS2 PE=1 SV=1	1.0E-84	[1..232]	[1..232]
CE20297 - status:Partially_confirmed UniProt:Q9XWF2 protein_id:CAA21720.1	1.0E-77	[5..207]	[7..205]
KIN - KIN, antigenic determinant of recA protein homolog (mouse) gi\|114629282 - gi\|114629282\|ref\|XP_001148768.1\| PREDICTED: HsKin17 protein isoform 1 [Pan troglodytes]	7.0E-72	[2..205]	[4..203]
gi\|34896668, gi\|... - gi\|34896668\|ref\|NP_909678.1\| hypothetical protein [Oryza sativa], gi\|12583802\|gb\|AAG59654.1\|AC084319...	1.0E-71	[3..186]	[5..186]
kin17-PA - The gene kin17 is referred to in FlyBase by the symbol Dmel\kin17 (CG5649, FBgn0024887). It is a pro...	2.0E-71	[2..199]	[4..200]
gi\|18405389, gi\|... - gi\|4204268\|gb\|AAD10649.1\| Similar to Kin17 protein [Arabidopsis thaliana], pir\|\|H96596 hypothetical ...	1.0E-64	[3..182]	[5..182]
KIN17_SCHPO - KIN17-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC365.09c PE=3 SV=1 SPBC365.09c - human KIN homolog	2.0E-62	[2..212]	[4..211]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYDSAKYW SKQGARRGLQ KTRYYCQICQ RQCKDANGFQ SHNKSPSHLR KISQVTAEDA  60
   61 RRYNIQFEKG FLQLLKQRHG EKWIDANKVY NEYVQDRDHV HMNATMHRSL TQFVRYLGRA 120
  121 GKVDVDMDID DTSENVEGPL LIRIHPSSLS SPSEDGMLRS QQEEQEVIAA ELLKRQLNRA 180
  181 KRQTEKVYQP EMKSEISGDS TLKRVQVTFH GNGRVNKKKK KVPPRKDGIK FR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits