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View Structure Prediction Details

Protein: VAM10
Organism: Saccharomyces cerevisiae
Length: 114 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for VAM10.

Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFEVFGEVL ASYIVSSKTK GELAFPVNNA PPDSLVAINC VVLFLRSAIG SCSGAKELIR  60
   61 SSALELSCSS SCGLPATDKP GSFHSGALSK SILSANEAVV SKSSLSFLSS FVDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.458 a.1.1 Globin-like
View Download 0.458 a.1.1 Globin-like
View Download 0.439 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.439 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.409 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.397 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.353 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.353 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.304 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.249 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.209 d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle