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View Structure Prediction Details

Protein: RPL3
Organism: Saccharomyces cerevisiae
Length: 387 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL3.

Description E-value Query
Range		 Subject
Range
gi|90076640, gi|... - gi|90076640|dbj|BAE88000.1| unnamed protein product [Macaca fascicularis], gi|90076620|dbj|BAE87990....
gi|109094341 - gi|109094341|ref|XP_001095608.1| PREDICTED: similar to ribosomal protein L3 isoform a [Macaca mulatt...
gi|109451472, gi... - gi|109452068|emb|CAK54896.1| RPL3 [synthetic construct], gi|109451472|emb|CAK54597.1| RPL3 [syntheti...
HGNC:10332|MIM:6... - protein L3
RPL3 - ribosomal protein L3
 0.0 [1..386] [1..395]
gi|57698 - gi|57698|emb|CAA44095.1| ribosomal protein L3 [Rattus rattus]
RL3_RAT - 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
 0.0 [1..386] [1..395]
gi|55716022 - gb|AAH86257.1| Unknown (protein for MGC:98779) [Xenopus laevis]
RL3_MOUSE - 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=1 SV=3
 0.0 [1..386] [1..395]
gi|7159574 - gi|7159574|emb|CAB76199.1| ribosomal protein L3 [Bos taurus]
 0.0 [1..386] [1..395]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [6..386] [1..390]
gi|15293867 - gi|15293867|gb|AAK95126.1|AF401554_1 ribosomal protein L3 [Ictalurus punctatus]
 0.0 [1..386] [1..394]
gi|18253047 - gi|18253047|gb|AAL62468.1| ribosomal protein L3 [Spodoptera frugiperda]
 0.0 [1..386] [1..395]

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Predicted Domain #1
Region A:
Residues: [1-18] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRKYEAPR HGHLGFLP

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [225-270] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFEGVTHRWG TKKLPRKTHR GLRKVACIGA WHPAHVMWSV ARAGQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10127.0
Match: 1k5yC_
Description: No description for 1k5yC_ was found.

Predicted Domain #2
Region A:
Residues: [19-32] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKRAASIRAR VKAF

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [45-83] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFLGYKAGMT TIVRDLDRPG SKFHKREVVE AVTVVDTPP

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [204-224] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVDSVFEQNE MIDAIAVTKG H

[Run NCBI BLAST on this sequence.]

Region D:
Residues: [271-387] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYHSRTSINH KIYRVGKGDD EANGATSFDR TKKTITPMGG FVHYGEIKND FIMVKGCIPG  60
   61 NRKRIVTLRK SLYTNTSRKA LEEVSLKWID TASKFGKGRF QTPAEKHAFM GTLKKDL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10127.0
Match: 1k5yC_
Description: No description for 1k5yC_ was found.

Predicted Domain #3
Region A:
Residues: [33-44] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKDDRSKPVA LT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [84-203] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVVVGVVGYV ETPRGLRSLT TVWAEHLSDE VKRRFYKNWY KSKKKAFTKY SAKYAQDGAG  60
   61 IERELARIKK YASVVRVLVH TQIRKTPLAQ KKAHLAEIQL NGGSISEKVD WAREHFEKTV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10127.0
Match: 1k5yC_
Description: No description for 1k5yC_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle