YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR062C
Organism:	Saccharomyces cerevisiae
Length:	268 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR062C.

Description	E-value	Query Range	Subject Range
YKR075C - Protein of unknown function; similar to YOR062Cp and Reg1p; expression regulated by glucose and Rgt1... YK55_YEAST - Uncharacterized protein YKR075C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKR075C ...	225.0	[0..1]	[126..1]
gi\|49528530, gi\|... - gi\|50293611\|ref\|XP_449217.1\| unnamed protein product [Candida glabrata], gi\|49528530\|emb\|CAG62191.1\|... gi\|49528530 - gi\|49528530\|emb\|CAG62191.1\| unnamed protein product [Candida glabrata]	190.0	[0..1]	[236..1]
gi\|49644957 - gi\|49644957\|emb\|CAG98529.1\| KLLA0F16489p [Kluyveromyces lactis] gi\|49644957, gi\|... - gi\|50311591\|ref\|XP_455821.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644957\|emb\|CAG9852...	153.0	[0..3]	[202..5]
gi\|44982895, gi\|... - gi\|45188078\|ref\|NP_984301.1\| ADR205Cp [Ashbya gossypii ATCC 10895], gi\|44982895\|gb\|AAS52125.1\| ADR20... gi\|44982895 - gi\|44982895\|gb\|AAS52125.1\| ADR205Cp [Ashbya gossypii ATCC 10895]	150.0	[0..3]	[217..2]
YIDF_SCHPO - Uncharacterized protein C227.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.15... SPAC227.15 - protein phosphatase regulatory subunit Reg1	112.0	[0..28]	[119..299]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLDDSVLT KKNIALLDNA TNYIRPAIDY FHFKFNYDSL DVSTTWRLLL KMRKHKLLRL  60
   61 PSCSSENEFD YSIYMARLYH CIWRRWSIKH FNLDEYKIDP LSINWNKEID VTVLYGPDLV 120
  121 GIHEREQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.887	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors

Predicted Domain #2

Region A:
Residues: [128-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTPTDFPMGN IKEQGKQLLD VRKEGSASSL LKKGSVFYSK GKWLSQRSIS FDDTVRRRDI  60
   61 DKRGRFRESC VLINDVEQFQ NYSIVWDESR HRYRRQALPD TYDYEHLYPN GDETPRNTPH 120
  121 DNIIIHQNLH SITEGSYIYI K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits