YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR052C
Organism:	Saccharomyces cerevisiae
Length:	150 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR052C.

Description	E-value	Query Range	Subject Range
gi\|74191771 - gi\|74191771\|dbj\|BAE32841.1\| unnamed protein product [Mus musculus]	136.0	[0..18]	[142..917]
gi\|61877055 - gi\|61877055\|ref\|XP_585822.1\| PREDICTED: similar to Zinc finger A20 domain containing protein 2 (Zinc...	124.0	[0..31]	[149..120]
ZFAND5 - zinc finger, AN1-type domain 5 gi\|109111764, gi... - gi\|109111770\|ref\|XP_001096545.1\| PREDICTED: zinc finger, A20 domain containing 2 isoform 5 [Macaca m... gi\|208968187, gi... - gi\|208968187\|dbj\|BAG73932.1\| zinc finger, AN1-type domain containing protein 5 [synthetic construct]... tr\|M3X338\|M3X338... - Zinc finger AN1-type containing 5 OS=Felis catus GN=ZFAND5 PE=4 SV=1 gi\|73946549, gi\|... - gi\|73946549\|ref\|XP_849428.1\| PREDICTED: similar to Zinc finger A20 domain containing protein 2 (Zinc... gi\|114624999, gi... - gi\|114625001\|ref\|XP_001142059.1\| PREDICTED: zinc finger protein 216 isoform 4 [Pan troglodytes], gi\|...	122.0	[0..31]	[149..99]
gi\|119582938 - gi\|119582938\|gb\|EAW62534.1\| zinc finger, A20 domain containing 2, isoform CRA_b [Homo sapiens] gi\|114624993 - gi\|114624993\|ref\|XP_520073.2\| PREDICTED: similar to zinc finger protein 216 splice variant 1 isoform...	122.0	[0..31]	[149..151]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDINEIEIP SRKDEIRQVT PKDPMHEIED KSTYHAKIKK SDSGTVLGAI PLNSRSSSNS  60
   61 SVTSTGQSSR RVTKKTTKKK KKNACYFDTC SSAASKFIGD CNFCKGHFCS KHRLMENHAC 120
  121 NGLTSCKEQL HQRNADKLEA EQTKAPKIQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1wffA
Description:	Solution structure of the zf-AN1 domain from mouse RIKEN cDNA 2810002D23 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits