YRC Public Data Repository - Protein Structure Prediction

Protein:	DFG16
Organism:	Saccharomyces cerevisiae
Length:	619 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DFG16.

Description	E-value	Query Range	Subject Range
gi\|49526461, gi\|... - gi\|50289441\|ref\|XP_447152.1\| unnamed protein product [Candida glabrata], gi\|49526461\|emb\|CAG60085.1\|... gi\|49526461 - gi\|49526461\|emb\|CAG60085.1\| unnamed protein product [Candida glabrata]	268.0	[0..77]	[466..44]
gi\|44983284 - gi\|44983284\|gb\|AAS52466.1\| AEL219Wp [Ashbya gossypii ATCC 10895] gi\|45190388, gi\|... - gi\|45190388\|ref\|NP_984642.1\| AEL219Wp [Ashbya gossypii ATCC 10895], gi\|44983284\|gb\|AAS52466.1\| AEL21...	201.0	[0..158]	[468..83]
gi\|49643843, gi\|... - gi\|50309401\|ref\|XP_454708.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643843\|emb\|CAG9979... gi\|49643843 - gi\|49643843\|emb\|CAG99795.1\| KLLA0E16831p [Kluyveromyces lactis]	193.0	[0..93]	[463..29]
gi\|50423253, gi\|... - gi\|50423253\|ref\|XP_460207.1\| hypothetical protein DEHA0E21978g [Debaryomyces hansenii CBS767], gi\|49...	58.0	[0..79]	[467..8]
gi\|46442899, gi\|... - gi\|68469988\|ref\|XP_721004.1\| hypothetical protein CaO19.881 [Candida albicans SC5314], gi\|68469747\|r... orf19.8500, orf1... - DFG16 CGDID:CAL0002891 Assembly 19, Contig19-10076 (195749, 197464) CDS, translated using codon tabl...	55.0	[0..87]	[453..3]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIRLHFYYL LTLVYHLGLV GAYEKAARKR IQPPDLIPGP PGHKLGDERP PHYDHRPPYK  60
   61 KHIDNIPAYN LTDLIDDKLL NKYENSCTVN VLTGGFISLA SNSWHLRAYN YTLNYPSFLI 120
  121 RCDNGSANPN FSHVLQDFVY DINNKFNVQD DSSKYIG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDPFPLGMIM ITFASGCICV ATWMLFLVVL LLPSDNHNRR NKVVHVYVLF SAIIRTVFLN  60
   61 ETIAVIFDSQ YHDDYQDASQ FESFIVETAP YKICELVANI LSDINWIYIV HYLQSNYGKP 120
  121 TWNWIPFKMK KGTHIIITVG CFLSLADNIL FANLLWRKNL VVLKVFYKLI ELLIYTIFIS 180
  181 IICYFTWHNF AYILLPKTAE INTDGKCKTK LRILWENYHE TIPLLAYNIL IFILFYFTTI 240
  241 FFAAFTKHVR GWTFNFVHLL KVLITVNVWG LIGVLEKREL HISKKTVLGR KINNRDKFFA 300
  301 NPTVNYYGED LGKHLSAITL N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [479-619]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDLNTTKSNT TSHDSSSLVG SPSPTWKSPI ERIRDRRRRH KIMKSENKFG QNPSFGSKSN  60
   61 GKPNTKTTLS KYRQLLRKPR RKTNSYEPKN GIGQNKEGST VRPGADKHIR DSNYLATDIS 120
  121 DNESMETELR TNHIYNYENS D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits