YRC Public Data Repository - Protein Structure Prediction

Protein:	CIN5
Organism:	Saccharomyces cerevisiae
Length:	295 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIN5.

Description	E-value	Query Range	Subject Range
CIN5 - Basic leucine zipper (bZIP) transcription factor of the yAP-1 family, mediates pleiotropic drug resi... YAP4_YEAST - AP-1-like transcription factor YAP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CIN5...	7.0E-68	[1..295]	[1..295]
JUN_COTJA - Transcription factor AP-1 OS=Coturnix coturnix japonica GN=JUN PE=2 SV=1 gi\|62640 - gi\|62640\|emb\|CAA33553.1\| unnamed protein product [Coturnix coturnix]	8.0E-35	[32..293]	[4..294]
gi\|15148926 - gi\|15148926\|gb\|AAK84890.1\|AF402609_1 TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgari...	6.0E-34	[81..291]	[1..227]
gi\|5650726 - gi\|5650726\|emb\|CAB51637.1\| c-Jun protein [Xenopus laevis]	2.0E-33	[8..293]	[22..295]
JUN_SERCA - Transcription factor AP-1 OS=Serinus canaria GN=JUN PE=2 SV=1	2.0E-32	[32..293]	[4..295]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	3.0E-32	[8..293]	[22..312]
HGNC:6204\|MIM:16... - oncogene gi\|61363182, gi\|... - gi\|61363182\|gb\|AAX42350.1\| v-jun sarcoma virus 17 oncogene-like [synthetic construct], gi\|61356807\|g... JUN - jun oncogene gi\|114556827 - gi\|114556827\|ref\|XP_513442.2\| PREDICTED: v-jun avian sarcoma virus 17 oncogene homolog [Pan troglody...	4.0E-32	[8..293]	[22..312]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-32	[8..293]	[22..312]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMQIKMDNH PFNFQPILAS HSMTRDSTKP KKMTDTAFVP SPPVGFIKEE NKADLHTISV  60
   61 VASNVTLPQI QLPKIATLEE PGYESRTGSL TDLSGRRNSV NIGALCEDVP NTAGPHIARP 120
  121 VTINNLIPPS LPRLNTYQLR PQLSDTHLNC HFNSNPYTTA SHAPFESSYT TASTFTSQPA 180
  181 ASYFPSNSTP ATRKNSATTN LPSEERRRVS VSLSEQVFNE GERYNNDGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [230-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIGKTGKPLR NTKRAAQNRS AQKAFRQRRE KYIKNLEEKS KLFDGLMKEN SELKKMIESL  60
   61 KSKLKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.211549
Match:	1gd2E_
Description:	PAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [227-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGQLIGKTGK PLRNTKRAAQ NRSAQKAFRQ RREKYIKNLE EKSKLFDGLM KENSELKKMI  60
   61 ESLKSKLKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1gd2E
Description:	PAP1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits