YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR021C
Organism:	Saccharomyces cerevisiae
Length:	213 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR021C.

Description	E-value	Query Range	Subject Range
gi\|207341260 - gi\|207341260\|gb\|EDZ69365.1\| YOR021Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407362 - gi\|190407362\|gb\|EDV10629.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] SFM1_YEAST - Protein arginine N-methyltransferase SFM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|151945650 - gi\|151945650\|gb\|EDN63891.1\| conserved protein [Saccharomyces cerevisiae YJM789] YOR021C - Putative protein of unknown function; YOR021C is not an essential gene; predicted to be involved in ...	2.0E-86	[1..213]	[1..213]
gi\|5458017, gi\|1... - gi\|5458017\|emb\|CAB49507.1\| Hypothetical protein [Pyrococcus abyssi GE5], gi\|14520801\|ref\|NP_126276.1... gi\|5458017, gi\|7... - pir\|\|D75178 hypothetical protein PAB0401 - Pyrococcus abyssi (strain Orsay), gi\|5458017\|emb\|CAB49507...	1.0E-63	[4..203]	[5..186]
gi\|7519199 - pir\|\|A71036 hypothetical protein PH1577 - Pyrococcus horikoshii gi\|14591355, gi\|... - gi\|3258006\|dbj\|BAA30689.1\| 208aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591355\|...	5.0E-63	[4..203]	[5..186]
gi\|18893734, gi\|... - gi\|18977960\|ref\|NP_579317.1\| hypothetical protein PF1588 [Pyrococcus furiosus DSM 3638], gi\|18893734...	2.0E-61	[4..203]	[5..187]
gi\|5105043, gi\|1... - gi\|5105043\|dbj\|BAA80357.1\| 257aa long hypothetical protein [Aeropyrum pernix K1], gi\|14601360\|ref\|NP... gi\|7516453 - pir\|\|G72612 hypothetical protein APE1363 - Aeropyrum pernix (strain K1)	1.0E-27	[81..153]	[123..195]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYIIEHMEE GFSEWVILEY SQILREVGAE NLILSSLPES TTEKDIPQRL LKLGLRWTTK  60
   61 DLKGINEDFK DLELLKDG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.880	d.68.3	SirA-like

Predicted Domain #2

Region A:
Residues: [79-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVCLLDPRAT IDLQPEDATK FDYFVFGGIL GDHPPRDRTK ELKTAYPNLL ISRRLGDKQM  60
   61 TTDTAIRTTQ LIIKDRIAFE DIKFIDYPEF RFNKNEATEM PFRYVLDKEG KPILPEGMLD 120
  121 LIKKDSAQSL DDLLM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits