YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR019W
Organism:	Saccharomyces cerevisiae
Length:	730 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR019W.

Description	E-value	Query Range	Subject Range
JIP4_YEAST - Uncharacterized protein JIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JIP4 PE=1 S... JIP4 - Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which w...	778.0	[0..41]	[730..67]
gi\|49529049 - gi\|49529049\|emb\|CAG62711.1\| unnamed protein product [Candida glabrata] gi\|50294648, gi\|... - gi\|50294648\|ref\|XP_449735.1\| hypothetical protein CAGL0M08954g [Candida glabrata CBS138], gi\|4952904...	407.0	[0..41]	[698..76]
gi\|17426716 - gi\|17426716\|emb\|CAC87103.1\| hypothetical protein [Saccharomyces uvarum] gi\|17426716 - gi\|17426716\|emb\|CAC87103.1\| hypothetical protein [Saccharomyces uvarum]	372.0	[0..1]	[201..1]
gi\|45190374, gi\|... - gi\|45190374\|ref\|NP_984628.1\| AEL233Cp [Ashbya gossypii ATCC 10895], gi\|44983270\|gb\|AAS52452.1\| AEL23... gi\|44983270 - gi\|44983270\|gb\|AAS52452.1\| AEL233Cp [Ashbya gossypii ATCC 10895]	286.0	[0..44]	[661..71]
gi\|50310363, gi\|... - gi\|50310363\|ref\|XP_455201.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644337\|emb\|CAG9790... gi\|49644337\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	219.0	[0..39]	[661..49]
YGBA_SCHPO - Universal stress protein A family protein C25B2.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... SPBC25B2.10 - Usp (universal stress protein) family protein	207.0	[0..228]	[392..127]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVCPQNDL QKCYRSLTFD VPGQQFEERN EQNLKKRAKK KGSFQPSVAF DTVPSTAGYS  60
   61 SIDDSREGFK GVPVPNYYTM EECYDDETDS FSPNLQYYLR DTFQSSPFLN TRKENKSESS 120
  121 SFPMRSSKLL EKNS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIKKYFLVSK NGKIVRRDYP STPVIVNETL MINRFEKNWI KLWRQRKLQI NERLNDKKKW  60
   61 FTYPELIFSE ERIKPLYRGD DSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [218-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCTKEQKRKH KILQQKVGYP NNPKTIVCHI NGKKHTWVAL DWTVYKFARN LDHIVVITTL  60
   61 PKMISNRKKT AKDDTEWAPG YQKEVIDQKL NDIFDYILQL VKVVKISVKI TLEIIVGKIK 120
  121 KSLVDVINVH TPDFLVLATL KHERNENLIT YKSKKLTDVF PVSYPIPTFV VPSKRMYSFE 180
  181 LNLQREVNEH YVSKNHMKHE HTDVESMSSS MFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	11.21
Match:
Description:	No description for 1jmvA was found.

Predicted Domain #4

Region A:
Residues: [432-730]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTISDISSHI SVDSYAEDFK RQGYIKKQFN TSNDSIPRKL TGLAQHSRRK ITGDIEKLQD  60
   61 DEKDRECTKE KLLLKKIDII IRESLKSSLA IETLPGKNVS QSSHGDQISS FKNALIGNGS 120
  121 KNTKFRKSLI PYSSSEEQNT TTTIKLSSSP TSQIKFATSV KHKDGRAALG KARNLPDIRH 180
  181 SISFDKENSF DPSDKSSSVD NSIPLRKVKS AGALRKVKTN DSSSSAGSKK SSSSFSTVNT 240
  241 FTGGGVGIFK VFKSGSSSGN KSSSRRNSSS GDVFESDDRN DKKKKKKKKK KSLFLFGKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits