YRC Public Data Repository - Protein Structure Prediction

Protein:	PET127
Organism:	Saccharomyces cerevisiae
Length:	800 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET127.

Description	E-value	Query Range	Subject Range
gi\|2644 - gi\|2644\|emb\|CAA41257.1\| Pet127 [Saccharomyces cerevisiae]	1288.0	[0..91]	[800..1]
gi\|11595670 - gi\|11595670\|emb\|CAC18291.1\| related to PET127 [Neurospora crassa]	636.0	[0..153]	[618..286]
gi\|32412634, gi\|... - gi\|32412634\|ref\|XP_326797.1\| hypothetical protein ( (AL451021) related to PET127 [Neurospora crassa]... gi\|85102792 - gi\|85102792\|ref\|XP_961390.1\| hypothetical protein NCU01304 [Neurospora crassa OR74A]	636.0	[0..153]	[618..286]
gi\|49525338 - gi\|49525338\|emb\|CAG58955.1\| unnamed protein product [Candida glabrata] gi\|50287203, gi\|... - gi\|50287203\|ref\|XP_446031.1\| unnamed protein product [Candida glabrata], gi\|49525338\|emb\|CAG58955.1\|...	516.0	[0..152]	[755..93]
gi\|88183213, gi\|... - gi\|88183213\|gb\|EAQ90681.1\| hypothetical protein CHGG_02616 [Chaetomium globosum CBS 148.51], gi\|1162...	493.0	[0..156]	[613..446]
PT127_SCHPO - mRNA degradation protein pet127, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... pet127 - mitochondrial membrane protein Pet127	481.0	[0..183]	[579..62]
gi\|39972461, gi\|... - gi\|39972461\|ref\|XP_367621.1\| hypothetical protein MGG_07532 [Magnaporthe grisea 70-15], gb\|EAA53255....	479.0	[0..139]	[618..347]
gi\|119196845, gi... - gi\|90307812\|gb\|EAS37443.1\| hypothetical protein CIMG_02797 [Coccidioides immitis RS], gi\|119196845\|r...	451.0	[0..179]	[619..194]
gi\|70984174, gi\|... - gi\|70984174\|ref\|XP_747606.1\| mitochondrial mRNA processing protein PET127 [Aspergillus fumigatus Af2...	437.0	[0..179]	[617..223]
gi\|115386240, gi... - gi\|115386240\|ref\|XP_001209661.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	428.0	[0..172]	[619..215]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFYNCRFLS RRLSVEPCRI GSAAKSYQQR SIYHFGAALT NAPSGRETPD KLRSDLHSAL  60
   61 EMVDEIYDTN STVEDIGNKE KGGRQKYTEE MDKAINLLKT NIKKEYRHDK YLERTKVGTY 120
  121 PGRRTYPGRR TYPARRTYPA SRTYSDS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.778	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.729	a.24.9	alpha-catenin/vinculin
View	Download	0.668	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.646	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.646	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.645	a.62.1	Hepatitis B viral capsid (hbcag)
View	Download	0.645	a.62.1	Hepatitis B viral capsid (hbcag)
View	Download	0.619	a.1.1	Globin-like
View	Download	0.618	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

Predicted Domain #2

Region A:
Residues: [148-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSYTFRINVQ KIRHALVRYN QDGVQKHNQK PPRIGHGLTR VLYQPLSLQK LRDNRSRMYN  60
   61 FDPAVENINP EYLEKKSEKD VNTDSSGEGQ SKPIFITPHK DESLLKVAKE HRKKYISSSS 120
  121 SMTSVLSQLH YLLSNFRRLN IIDSSISKNF PQKNCNYSES AYFPSAVILR KKRNGICSID 180
  181 SDRSLDREIV LSVLGHYLED FLTEKSLKNS SKSENYHYSS IDEFIVRSQL DAYDPNLPGT 240
  241 GVFDLKTRAV SAIRYDLSHV ESNNNQTGYE IDKVYGEFES LEREYFELIR SALLKYSLQA 300
  301 RIGKMDGIFV AYHNISKMFG FQYLPLDELD YIIHSSYNSK FDSLLKEKND ITKGIYGEED 360
  361 YILHYDRDDR KIACLVANRE FKMSMNLFSN ILKHVEQLLN SSNTKWEKCK IMLKTEVEEK 420
  421 RSKSGRFFNE PVLNIVALPL SPEYEDKSLL VKDTSNEQLT EELLNLRSYN ENLLEEHLNS 480
  481 LVGFKVNVKH FYHHH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [643-800]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNTTHLPDFA LKKNDILDTE SRKYISDMMK RDWYKDIPST QTPNFFHASD VSTWEVNSTF  60
   61 TDINDKQILR KLYFKYLDVK LNALKNQVIT RQEPDMSKKD EIMNRIKSLQ ARNDHRDNGS 120
  121 NKRYSNFGPT RLQTKLRAYA KKGALRRKLL ERSNKFHI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits