YRC Public Data Repository - Protein Structure Prediction

Protein:	SLG1
Organism:	Saccharomyces cerevisiae
Length:	378 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLG1.

Description	E-value	Query Range	Subject Range
SLG1_YEAST - Protein SLG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLG1 PE=1 SV=1 gi\|190407349 - gi\|190407349\|gb\|EDV10616.1\| protein SLG1 precursor [Saccharomyces cerevisiae RM11-1a] gi\|151945637 - gi\|151945637\|gb\|EDN63878.1\| conserved protein [Saccharomyces cerevisiae YJM789] SLG1 - Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway involved in maintenance of cell w...	6.0E-89	[1..378]	[1..378]
gi\|9628187, gi\|1... - gi\|9628187\|ref\|NP_042773.1\| pB602L [African swine fever virus], gi\|780449\|gb\|AAA65309.1\| pB602L, gi\|... VF602_ASFB7 - Protein B602L OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=Ba71V-079 PE=3 SV=1	5.0E-64	[135..332]	[162..361]
gi\|3043570 - gi\|3043570\|dbj\|BAA25449.1\| KIAA0523 protein [Homo sapiens]	1.0E-59	[23..192]	[37..211]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-47	[17..205]	[812..1011]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPNKTSLLL ALLSILSQAN AYEYVNCFSS LPSDFSKADS YNWQSSSHCN SECSAKGASY  60
   61 FALY

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	11.43
Match:	1ei3A
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [65-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHSECYCGDT NPSGSESTSS SCNTYCFGYS SEMCGGEDAY SVYQLDSDTN SNSISSSDSS  60
   61 TESTSASSST TSSTTSSTTS TTSSTTSSTT SSMASSSTVQ NSPESTQAAA SISTSQSSST 120
  121 VTSESSLTSD TLATSSTSSQ SQDATSIIYS TTFHTEGGST IFVTNTITAS AQNSGSATGT 180
  181 AGSDSTSGSK THKKKANVGA IVGGVVGGVV GAVAIALCIL LIVRHINMKR EQDRMEKEYQ 240
  241 EAIKPVEYPD KLYASSFSSN HGPSSGSFEE EHTKGQTDIN PFDDSRRISN GTFINGGPGG 300
  301 KNNVLTVVNP DEAD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.95
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits