YRC Public Data Repository - Protein Structure Prediction

Protein:	TSR3
Organism:	Saccharomyces cerevisiae
Length:	313 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSR3.

Description	E-value	Query Range	Subject Range
gi\|109127139 - gi\|109127139\|ref\|XP_001088384.1\| PREDICTED: similar to CG4338-PA [Macaca mulatta]	373.0	[0..12]	[254..13]
C16orf42 - chromosome 16 open reading frame 42	372.0	[0..33]	[254..45]
TSR3_MOUSE - Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=1 SV=1	369.0	[0..31]	[250..43]
gi\|149052099, gi... - ref\|XP_340769.1\| similar to RIKEN cDNA 0610007P22 [Rattus norvegicus], gi\|149052099\|gb\|EDM03916.1\| s...	368.0	[0..1]	[301..1]
gi\|45185694, gi\|... - gi\|45185694\|ref\|NP_983410.1\| ACR007Wp [Ashbya gossypii ATCC 10895], gi\|44981449\|gb\|AAS51234.1\| ACR00... gi\|44981449 - gi\|44981449\|gb\|AAS51234.1\| ACR007Wp [Ashbya gossypii ATCC 10895]	361.0	[0..1]	[312..1]
gi\|61825119, gi\|... - gi\|61825119\|ref\|XP_585533.1\| PREDICTED: similar to OTTHUMP00000045502 isoform 1 [Bos taurus], gi\|149...	355.0	[0..13]	[259..16]
gi\|49525113, gi\|... - gi\|50286755\|ref\|XP_445807.1\| unnamed protein product [Candida glabrata], gi\|49525113\|emb\|CAG58726.1\|... gi\|49525113 - gi\|49525113\|emb\|CAG58726.1\| unnamed protein product [Candida glabrata]	354.0	[0..2]	[294..4]
gi\|50306295, gi\|... - gi\|50306295\|ref\|XP_453120.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642254\|emb\|CAH0021... gi\|49642254 - gi\|49642254\|emb\|CAH00216.1\| KLLA0D01111p [Kluyveromyces lactis]	352.0	[0..1]	[300..1]
orf19.13224, orf... - orf19.5802 CGDID:CAL0002246 Assembly 19, Contig19-10234 (44109, 45149) CDS, translated using codon t... gi\|46436962, gi\|... - gi\|68481539\|ref\|XP_715278.1\| hypothetical protein CaO19.13224 [Candida albicans SC5314], gi\|68481408...	348.0	[0..1]	[312..1]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGKNKMHE PKNGRPQRGA NGHSSRQNHR RMEMKYDNSE KMKFPVKLAM WDFDHCDPKR  60
   61 CSGKKLERLG LIKSLRVGQK FQGIVVSPNG KGVVCPDDLE IVEQHGASVV ECSWARLEEV 120
  121 PFNKIGGKHE RLLPYLVAAN QVNYGRPWRL NCVEALAACF AIVGRMDWAS ELLSHFSWGM 180
  181 GFLELNKELL EIYQQCTDCD SVKRAEEEWL QKLEKETQER KSRAKEEDIW MMGNINRR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [239-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNGSQSDTSE SEENSEQSDL EGNNQCIEYD SLGNAIRIDN MKSREAQSEE SEDEESGSKE  60
   61 NGEPLSYDPL GNLIR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits