YRC Public Data Repository - Protein Structure Prediction

Protein:	PSF3
Organism:	Saccharomyces cerevisiae
Length:	236 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSF3.

Description	E-value	Query Range	Subject Range
GINS3 - GINS complex subunit 3 (Psf3 homolog)	3.0E-56	[45..232]	[19..189]
PSF3_MOUSE - DNA replication complex GINS protein PSF3 OS=Mus musculus GN=Gins3 PE=2 SV=1	2.0E-54	[45..232]	[19..189]
psf3 (reserved) - GINS complex subunit Psf3 PSF3_SCHPO - DNA replication complex GINS protein psf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	1.0E-50	[43..232]	[1..161]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-48	[45..232]	[4..173]
gi\|15221930 - gi\|15221930\|ref\|NP_173342.1\| TTN10 (TITAN 10) [Arabidopsis thaliana]	5.0E-48	[45..232]	[4..173]
gi\|194189353, gi... - gi\|195481907\|ref\|XP_002101829.1\| GE15395 [Drosophila yakuba], gi\|194189353\|gb\|EDX02937.1\| GE15395 [D... gi\|220958878, gi... - gi\|220958878\|gb\|ACL91982.1\| Psf3-PA [synthetic construct], gi\|220949654\|gb\|ACL87370.1\| Psf3-PA [synt... Psf3-PA, FBpp030... - The gene Psf3 is referred to in FlyBase by the symbol Dmel\Psf3 (CG2222, FBgn0030196). It is a prote...	3.0E-47	[45..233]	[10..171]
gi\|19074892, gi\|... - gi\|19074892\|ref\|NP_586398.1\| hypothetical protein ECU11_0920 [Encephalitozoon cuniculi GB-M1], gi\|19... gi\|19074892 - gi\|19074892\|ref\|NP_586398.1\| hypothetical protein ECU11_0920 [Encephalitozoon cuniculi GB-M1]	2.0E-24	[43..149]	[1..93]

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Predicted Domain #1

Region A:
Residues: [1-39]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYPSLRVLR DKCRRVVKIA MELMPTLFLV LYFYNRRAS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [154-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMLFSEKELA NVVSELLLQR AQELNHHASS LSIDLNADST GKNSANTNIA TSTFLLKLEE  60
   61 MEKEIYKKSH ESYKDTKRWM FKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	1.78
Match:	1ek8A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [40-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IERMGYYDID DVLADGTEFP CKFQYDIPGL GYLENNPGRP ITKNTKLSLP LWLARILAIV  60
   61 GGDEALVDEE PVPFVELLPP DMFSTKVMNA IKTDPVALDL HSINSHFFSL AIKW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	1.78
Match:	1ek8A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits