| Protein: | NOP8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 484 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..484] | [1..484] |
|
|
0.0 | [5..479] | [3..473] |
|
|
3.0E-34 | [8..145] | [200..342] |
|
|
3.0E-28 | [2..122] | [21..142] |
|
|
3.0E-28 | [7..122] | [8..124] |
|
|
5.0E-25 | [8..154] | [207..358] |
|
|
7.0E-25 | [8..145] | [209..351] |
|
|
6.0E-23 | [2..145] | [210..362] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MDSVIQKRIF VGNIFHNADD CYSELLDRFG KFGDCQDFQF EKHNHFAFID IRFNDEADFN 60
61 KLRKSFNNVK FKGNILKVDE AKPNWESTWA VQHAKDLKED IILNAKMKKK NWQHYKKMEN 120
121 VAKSWKDHKE VIAGRMREAP RKRSQLRNIT FRINV
|
| Detection Method: |  |
| Confidence: | 8.0 |
| Match: | 1b7fA_ |
| Description: | Sex-lethal protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.72964573417386 | bayes_pls_golite062009 |
| binding | 3.0101982407193 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34356093608328 | bayes_pls_golite062009 |
| 1.46562488829931 | bayes_pls_golite062009 | |
| structural molecule activity | 1.10982714865204 | bayes_pls_golite062009 |
| protein binding | 0.89093640300829 | bayes_pls_golite062009 |
| mRNA binding | 0.554135435832456 | bayes_pls_golite062009 |
| ribosomal large subunit binding | 0.13509933485234 | bayes_pls_golite062009 |
|
Region A: Residues: [156-484] |
1 11 21 31 41 51
| | | | | |
1 NGSLKVYKCY KTKLWGYERN KELNDLVYKF TNNFWKNGYN HIVDRLDYSR AVKTVRFKNG 60
61 LKQLTVSKDE NVCSGEMDSD ENMSEEEKEK NNVILNDLLK DFDFDKPMTL NDSDEELLTE 120
121 QRKGEEEEEE EEEKEVNAPE YENVNKTKDQ STLPQEKPEE RKEQDEGDGQ EDNEFIPTFT 180
181 KEIGQGTISN TETLRNLFNP NEAEPVSQFK LIEDSDNDID HAKDVDVNQL EEEVSKSSDT 240
241 LGLTSAPVPH VSRDKDNKNF LFFPHLQSPF LVGQTQLSKV RAPGRETMLS NWDEEFWANR 300
301 GNWTRDMRRK MKDALKHRKR KQSKSGLLL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [328-389] |
1 11 21 31 41 51
| | | | | |
1 NEFIPTFTKE IGQGTISNTE TLRNLFNPNE AEPVSQFKLI EDSDNDIDHA KDVDVNQLEE 60
61 EV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [390-484] |
1 11 21 31 41 51
| | | | | |
1 SKSSDTLGLT SAPVPHVSRD KDNKNFLFFP HLQSPFLVGQ TQLSKVRAPG RETMLSNWDE 60
61 EFWANRGNWT RDMRRKMKDA LKHRKRKQSK SGLLL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
