YRC Public Data Repository - Protein Structure Prediction

Protein:	ARG8
Organism:	Saccharomyces cerevisiae
Length:	423 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARG8.

Description	E-value	Query Range	Subject Range
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	0.0	[29..421]	[18..396]
gi\|993043 - gi\|993043\|gb\|AAC53660.1\| acetylornithine aminotransferase [synthetic construct]	0.0	[1..423]	[10..432]
ARGD_YEAST - Acetylornithine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... ARG8 - Acetylornithine aminotransferase, catalyzes the fourth step in the biosynthesis of the arginine prec...	0.0	[1..423]	[1..423]
ARGD_AQUAE - Acetylornithine aminotransferase OS=Aquifex aeolicus (strain VF5) GN=argD PE=1 SV=1 ARGD_AQUAE - Acetylornithine aminotransferase OS=Aquifex aeolicus GN=argD PE=1 SV=1	0.0	[22..418]	[1..376]
ARGD_CLOAB - Acetylornithine aminotransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419... ARGD_CLOAB - Acetylornithine aminotransferase OS=Clostridium acetobutylicum GN=argD PE=3 SV=1	0.0	[23..419]	[4..387]
ARGD_KLULA - Acetylornithine aminotransferase, mitochondrial OS=Kluyveromyces lactis GN=ARG8 PE=3 SV=2 ARGD_KLULA - Acetylornithine aminotransferase, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359...	0.0	[24..423]	[24..423]
ARGD_THEMA - Acetylornithine aminotransferase OS=Thermotoga maritima GN=argD PE=1 SV=1 ARGD_THEMA - Acetylornithine aminotransferase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 1...	0.0	[24..421]	[2..385]
ARGD_SYNY3 - Acetylornithine aminotransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=argD PE=3 SV=1 gi\|7434142 - pir\|\|S75245 N-acetylornithine aminotransferase - Synechocystis sp. (strain PCC 6803) ARGD_SYNY3 - Acetylornithine aminotransferase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=argD P...	0.0	[9..422]	[19..429]
gi\|7434146 - pir\|\|G69044 N-acetylornithine aminotransferase - Methanobacterium thermoautotrophicum (strain Delta ... ARGD_METTH - Acetylornithine aminotransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM ...	0.0	[14..421]	[3..390]
ARGD_ARCFU - Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1 ARGD_ARCFU - Acetylornithine aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / J...	0.0	[8..414]	[1..373]

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Predicted Domain #1

Region A:
Residues: [1-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRYLSSTS SRRFTSILEE KAFQVTTYSR PEDLCITRGK NAKLYDDVNG KEYIDFTAGI  60
   61 AVTALGHANP KVAEILHHQA NKLVHSSNLY FTKECLDLSE KIVEKTKQFG GQHDASRVFL 120
  121 CNSGTEANEA ALKFAKKHGI MKNPSKQGIV AFENSFHGRT MGALSVTWNS KYRTPFGDLV 180
  181 PHVSFLNLND EMTKLQSYIE TKKDEIAGLI VEPIQGEGGV FPVEVEKLTG LKKICQDNDV 240
  241 IVIHDEIQCG LGRSGKLWAH AYLPSEAHPD IFTSAKALGN GFPIAATIVN EKVNNALRVG 300
  301 DHGTTYGGNP LACSVSNYVL DTIADEAFLK QVSKKSDILQ KRLREIQAKY PNQIKTIRGK 360
  361 GLMLGAEFVE PPTEVIKKAR ELGLLIITAG KSTVRFVPAL TIEDELIEEG MDAFEKAIEA 420
  421 VYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	586.0103
Match:	1lx9A_
Description:	No description for 1lx9A_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits