YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS68
Organism:	Saccharomyces cerevisiae
Length:	184 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS68.

Description	E-value	Query Range	Subject Range
gi\|49525066, gi\|... - gi\|50286661\|ref\|XP_445760.1\| unnamed protein product [Candida glabrata], gi\|49525066\|emb\|CAG58679.1\|... gi\|49525066 - gi\|49525066\|emb\|CAG58679.1\| unnamed protein product [Candida glabrata]	193.0	[0..9]	[184..8]
SPBC8D2.02c - vacuolar sorting protein Vps68 YGW2_SCHPO - UPF0220 protein C8D2.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi063 PE=3 SV=1	185.0	[0..8]	[184..7]
gi\|169246080 - gi\|169246080\|gb\|ACA51057.1\| transmembrane protein 50B (predicted) [Callicebus moloch] gi\|195977122 - gi\|195977122\|gb\|ACG63670.1\| transmembrane protein 50B (predicted) [Otolemur garnettii] TM50B_PONAB - Transmembrane protein 50B OS=Pongo abelii GN=TMEM50B PE=2 SV=1 gi\|57108776 - gi\|57108776\|ref\|XP_535582.1\| PREDICTED: similar to Transmembrane protein 50B (HCV p7-transregulated ... gi\|67970122 - gi\|67970122\|dbj\|BAE01405.1\| unnamed protein product [Macaca fascicularis] TM50B_BOVIN - Transmembrane protein 50B OS=Bos taurus GN=TMEM50B PE=2 SV=1 gi\|114683958 - gi\|114683958\|ref\|XP_001166285.1\| PREDICTED: transmembrane protein 50B [Pan troglodytes] gi\|167427271 - gi\|167427271\|gb\|ABZ80250.1\| transmembrane protein 50B (predicted) [Callithrix jacchus] TM50B_PONPY - Transmembrane protein 50B - Pongo pygmaeus (Orangutan) TM50B_PAPAN - Transmembrane protein 50B OS=Papio anubis GN=TMEM50B PE=3 SV=1 gi\|109065463 - gi\|109065463\|ref\|XP_001091629.1\| PREDICTED: transmembrane protein 50B [Macaca mulatta] TMEM50B - transmembrane protein 50B gi\|177773076 - gi\|177773076\|gb\|ACB73271.1\| transmembrane protein 50B (predicted) [Rhinolophus ferrumequinum] gi\|149742155 - gi\|149742155\|ref\|XP_001498036.1\| PREDICTED: similar to Transmembrane protein 50B (HCV p7-trans-regul...	177.0	[0..10]	[175..8]
gi\|149059845, gi... - gi\|68163465\|ref\|NP_001020185.1\| transmembrane protein 50B [Rattus norvegicus], gi\|60551525\|gb\|AAH913... TM50B_MOUSE - Transmembrane protein 50B OS=Mus musculus GN=Tmem50b PE=1 SV=1	176.0	[0..10]	[175..8]
gi\|32405830, gi\|... - gi\|32405830\|ref\|XP_323528.1\| hypothetical protein [Neurospora crassa], gi\|28922688\|gb\|EAA31912.1\| pr... gi\|85101432 - gi\|85101432\|ref\|XP_961148.1\| hypothetical protein NCU04188 [Neurospora crassa OR74A]	174.0	[0..12]	[184..7]
gi\|50729933 - gi\|50729933\|ref\|XP_416711.1\| PREDICTED: similar to C21orf4 [Gallus gallus]	174.0	[0..10]	[175..8]
gi\|50308561, gi\|... - gi\|50308561\|ref\|XP_454283.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643418\|emb\|CAG9937... gi\|49643418 - gi\|49643418\|emb\|CAG99370.1\| KLLA0E07415p [Kluyveromyces lactis]	171.0	[0..6]	[184..5]
gi\|111070228 - gi\|111070228\|gb\|EAT91348.1\| hypothetical protein SNOG_01699 [Phaeosphaeria nodorum SN15]	170.0	[0..12]	[184..40]
gi\|44982465 - gi\|44982465\|gb\|AAS51751.1\| ADL169Wp [Ashbya gossypii ATCC 10895] gi\|44982465, gi\|... - gi\|45187704\|ref\|NP_983927.1\| ADL169Wp [Ashbya gossypii ATCC 10895], gi\|44982465\|gb\|AAS51751.1\| ADL16...	166.0	[0..5]	[184..4]
gi\|28475307, gi\|... - gi\|47209347\|emb\|CAF93322.1\| unnamed protein product [Tetraodon nigroviridis], gi\|29125851\|emb\|CAD794...	166.0	[0..10]	[175..8]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADDHVSLF RFPFKIPTFR GIRKGGVYLS GALYALGFWI FLDAVLYSRY SNASDVHVTF  60
   61 IDWIPFLCST LGTLIVNSIE KNRLLQGALS SDGGAFGSGV GDLDSSMAWQ ARTVLFFGFA 120
  121 LLAGGLSGSI VVLIIKFLVK DYNTYPTLGM GVNNVLGNVC ILLSCVVLWI AQNVEDEYSY 180
  181 SLTL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	124.585027
Match:	PF05255.2
Description:	No description for PF05255.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.466	N/A	N/A	c.66.1	S-adenosyl-L-methionine-dependent methyltransferases
View	Download	0.466	N/A	N/A	c.66.1	S-adenosyl-L-methionine-dependent methyltransferases
View	Download	0.321	N/A	N/A	a.216.1	Description not found.
View	Download	0.315	N/A	N/A	a.79.1	Antitermination factor NusB
View	Download	0.309	N/A	N/A	a.79.1	Antitermination factor NusB
View	Download	0.301	N/A	N/A	b.82.2	Clavaminate synthase-like
View	Download	0.298	N/A	N/A	b.82.2	Clavaminate synthase-like
View	Download	0.247	N/A	N/A	f.31.1	Photosystem I reaction center subunit XI, PsaL
View	Download	0.247	N/A	N/A	f.31.1	Photosystem I reaction center subunit XI, PsaL
View	Download	0.243	N/A	N/A	a.123.1	Nuclear receptor ligand-binding domain
View	Download	0.240	N/A	N/A	d.122.1	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
View	Download	0.232	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.206	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits