YRC Public Data Repository - Protein Structure Prediction

Protein:	SHR5
Organism:	Saccharomyces cerevisiae
Length:	237 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHR5.

Description	E-value	Query Range	Subject Range
ERFD_YEAST - Ras modification protein ERF4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR5 PE=1 ... SHR5 - Subunit of a palmitoyltransferase, composed of Shr5p and Erf2p, that adds a palmitoyl lipid moiety t...	0.0	[1..237]	[1..237]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDSHQKEED NANTSERALF FNYHEFSYSF YEDLGSEDAK PTEHDEDHKL CITHFPNVYA  60
   61 ARGSAEFQVT RVVRVPRRFD ESRSSLETPQ FSTQLPGSEP AAIVGDDGTS FVRCGRYDIG 120
  121 DHVFGCSSVS PLSEYLSAAE LAEVVHRVNG FLLREEGEVF GWRNLSGLLL DMLTGGLWSW 180
  181 VLGPLLSRPV FQESLALEQY VAQLNSPGGL LHERGVRLVL PRRSGCLSLD FVVPRPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEVFGWRNLS GLLLDMLTGG LWSWVLGPLL SRPVFQESLA LEQYVAQLNS PGGLLHERGV  60
   61 RLVLPRRSGC LSLDFVVPRP K