YRC Public Data Repository - Protein Structure Prediction

Protein:	YOL107W
Organism:	Saccharomyces cerevisiae
Length:	342 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOL107W.

Description	E-value	Query Range	Subject Range
gi\|190407244 - gi\|190407244\|gb\|EDV10511.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YOL107W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... TM115_YEAST - Transmembrane protein 115 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107...	0.0	[1..342]	[1..342]
TMEM115 - transmembrane protein 115 gi\|123997249, gi... - gi\|123997249\|gb\|ABM86226.1\| transmembrane protein 115 [synthetic construct], gi\|123982582\|gb\|ABM8303...	2.0E-73	[70..339]	[52..295]
TM115_MOUSE - Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1 tr\|M0RAY5\|M0RAY5_RAT - Protein LOC100910557 OS=Rattus norvegicus GN=LOC100910557 PE=4 SV=1	9.0E-71	[70..339]	[52..295]
CG9536-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG9536 (CG9536, FBgn0031818). It is a protein... gi\|220946438 - gi\|220946438\|gb\|ACL85762.1\| CG9536-PA [synthetic construct]	5.0E-69	[58..339]	[40..305]
gi\|6648207 - gi\|6648207\|gb\|AAF21205.1\|AC013483_29 unknown protein [Arabidopsis thaliana]	1.0E-68	[58..339]	[110..362]
CE23643 - status:Confirmed UniProt:Q9U3K1 protein_id:CAB54220.1	3.0E-66	[66..339]	[55..307]
gi\|85110884 - gi\|85110884\|ref\|XP_963680.1\| hypothetical protein NCU06839 [Neurospora crassa OR74A] gi\|28925366, gi\|... - gi\|32413290\|ref\|XP_327125.1\| hypothetical protein [Neurospora crassa], gi\|28925366\|gb\|EAA34444.1\| co...	2.0E-64	[61..308]	[37..271]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYSSRFLEL NIPDSFLNIN KIPDATKFIT VTYICLTATL FCIRRSLYNK LVLEDPNLDY  60
   61 NLITSPLLQM VPSQIWRYPT SLVLSNFIDT KAWKVVVNLL NLIIGGSFIE RNWNSSKEMF 120
  121 KFIIVLGSLT NVLIIMLTLL VSFFSNKVRL DIPLDGNYTI LIGFPIIYRQ LLPETTIIHL 180
  181 KTPQFLAKNF RFKLLPIFVM FTMTVTQIIW FHHFAQLFSI WVTFFASWSY LRFFQKLAPL 240
  241 NC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [243-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSLPTTNSQG GQEILVGDAS DTFQLIYFFP DLIKPILRPI FNFIYNVVVV KFKVIKPFHD  60
   61 IDIDIGNTIA ESRGAKKIMT VEERRRQLAL QVLEERMVNP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits