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View Structure Prediction Details

Protein: YOL103W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOL103W-A.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
575.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP QISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 70.920819
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.269 N/A N/A a.1.1 Globin-like
View Download 0.214 N/A N/A c.78.1 Aspartate/ornithine carbamoyltransferase
View Download 0.200 N/A N/A a.70.2 Description not found.

Predicted Domain #2
Region A:
Residues: [178-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNDFPNWVKT YIKFLQNSNL GGIIPTVNGK PVRQITDDEL TFLYNTFQIF APSQFLPTWV  60
   61 KDILSVDYTD IMKILSKSIE KMQSDTQEAN DIVTLANLQY NGS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.922 a.118.13 Arp2/3 complex 16 kDa subunit ARPC5
View Download 0.922 a.118.13 Arp2/3 complex 16 kDa subunit ARPC5
View Download 0.760 a.4.12 TrpR-like
View Download 0.706 a.3.1 Cytochrome c
View Download 0.706 a.3.1 Cytochrome c
View Download 0.668 a.77.1 DEATH domain
View Download 0.654 a.247.1 Description not found.
View Download 0.593 a.4.12 TrpR-like

Predicted Domain #3
Region A:
Residues: [281-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPADAFETKV TNIINRLNNN GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF  60
   61 LDIHAIYEEQ QGSRNSKPNY RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA 120
  121 HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLRPGTY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.300 N/A N/A c.95.1 Thiolase-like
View Download 0.277 N/A N/A a.59.1 PAH2 domain
View Download 0.258 N/A N/A c.51.2 TolB, N-terminal domain
View Download 0.254 N/A N/A a.24.14 FAT domain of focal adhesion kinase
View Download 0.253 N/A N/A a.26.1 4-helical cytokines


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle