| Protein: | ITR2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 612 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ITR2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [35..611] | [9..582] |
|
|
0.0 | [66..608] | [14..563] |
|
|
0.0 | [43..608] | [1..564] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MAEMKNSTAA SSRWTKSRLS HFFPSYTNSS GMGAASTDQS STQGEELHHR KHCEEDNDGQ 60
61 KPKKSPVSTS TMQIKSRQDE DEDDGRIVIK PVN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.229 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.429 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.259 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.250 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
|
Region A: Residues: [94-293] |
1 11 21 31 41 51
| | | | | |
1 DEDDTSVIIT FNQSISPFII TLTFVASISG FMFGYDTGYI SSALISINRD LDNKVLTYGE 60
61 KELITAATSL GALITSVGAG TAADVFGRRP CLMFSNLMFL IGAILQITAH KFWQMAAGRL 120
121 IMGFGVGIGS LISPLFISEI APKMIRGRLT VINSLWLTGG QLIAYGCGAG LNHVKNGWRI 180
181 LVGLSLIPTV LQFSFFCFLP
|
|
Region B: Residues: [341-561] |
1 11 21 31 41 51
| | | | | |
1 KNPITKFWNM VKELHTVPSN FRALIIGCGL QAIQQFTGWN SLMYFSGTIF ETVGFKNSSA 60
61 VSIIVSGTNF VFTLIAFFCI DKIGRRYILL IGLPGMTVAL VICAIAFHFL GIKFNGADAV 120
121 VASDGFSSWG IVIIVFIIVY AAFYALGIGT VPWQQSELFP QNVRGVGTSY ATATNWAGSL 180
181 VIASTFLTML QNITPTGTFS FFAGVACLST IFCYFCYPEL S
|
| Detection Method: | |
| Confidence: | 521.9794 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
|
Region A: Residues: [294-340] |
1 11 21 31 41 51
| | | | | |
1 DTPRYYVMKG DLKRAKMVLK RSYVNTEDEI IDQKVEELSS LNQSIPG
|
|
Region B: Residues: [562-612] |
1 11 21 31 41 51
| | | | | |
1 GLELEEVQTI LKDGFNIKAS KALAKKRKQQ VAEGAAHHKL KFEPTQEIVE S
|
| Detection Method: | |
| Confidence: | 521.9794 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
