| Protein: | GPD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 440 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPD2.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..440] | [1..440] |
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8.0E-97 | [49..414] | [1..366] |
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1.0E-95 | [37..434] | [31..406] |
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5.0E-95 | [63..439] | [14..389] |
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5.0E-93 | [84..434] | [4..344] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MLAVRRLTRY TFLKRTHPVL YTRRAYKILP SRSTFLRRSL LQTQLHSKMT AHTNIKQHKH 60
61 CHEDHPIRRS D
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.368 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.460 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.401 | a.46.1 | Methionine synthase domain |
| View | Download | 0.393 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.820 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.717 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.679 | a.7.7 | BAG domain |
| View | Download | 0.641 | a.7.1 | Spectrin repeat |
| View | Download | 0.636 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.618 | a.112.1 | Description not found. |
| View | Download | 0.364 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.359 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.356 | a.65.1 | Annexin |
| View | Download | 0.342 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.318 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.294 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.289 | a.7.7 | BAG domain |
| View | Download | 0.289 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.285 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.283 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.282 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.272 | a.118.1 | ARM repeat |
| View | Download | 0.261 | a.126.1 | Serum albumin-like |
| View | Download | 0.239 | a.24.3 | Cytochromes |
| View | Download | 0.218 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.216 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.213 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.203 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.203 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.202 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.202 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [72-289] |
1 11 21 31 41 51
| | | | | |
1 SAVSIVHLKR APFKVTVIGS GNWGTTIAKV IAENTELHSH IFEPEVRMWV FDEKIGDENL 60
61 TDIINTRHQN VKYLPNIDLP HNLVADPDLL HSIKGADILV FNIPHQFLPN IVKQLQGHVA 120
121 PHVRAISCLK GFELGSKGVQ LLSSYVTDEL GIQCGALSGA NLAPEVAKEH WSETTVAYQL 180
181 PKDYQGDGKD VDHKILKLLF HRPYFHVNVI DDVAGISI
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Region B: Residues: [334-347] |
1 11 21 31 41 51
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1 PESKVETYYQ ESAG
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| Detection Method: | |
| Confidence: | 216.440336 |
| Match: | 1evyA_ |
| Description: | Glycerol-3-phosphate dehydrogenase; Glycerol-3- phosphate dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [290-333] |
1 11 21 31 41 51
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1 AGALKNVVAL ACGFVEGMGW GNNASAAIQR LGLGEIIKFG RMFF
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Region B: Residues: [348-440] |
1 11 21 31 41 51
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1 VADLITTCSG GRNVKVATYM AKTGKSALEA EKELLNGQSA QGIITCREVH EWLQTCELTQ 60
61 EFPLFEAVYQ IVYNNVRMED LPEMIEELDI DDE
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| Detection Method: | |
| Confidence: | 216.440336 |
| Match: | 1evyA_ |
| Description: | Glycerol-3-phosphate dehydrogenase; Glycerol-3- phosphate dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
