YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS15
Organism:	Saccharomyces cerevisiae
Length:	142 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS15.

Description	E-value	Query Range	Subject Range
gi\|192910788 - gi\|192910788\|gb\|ACF06502.1\| 40S ribosomal protein S15 [Elaeis guineensis] RS15_ELAOL - 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1	3.0E-52	[4..142]	[12..153]
RS152_ARATH - 40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1	2.0E-51	[1..142]	[8..152]
gi\|116793646, gi... - gi\|224284325\|gb\|ACN39898.1\| unknown [Picea sitchensis], gi\|116793646\|gb\|ABK26826.1\| unknown [Picea s... RS15_PICMA - 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1	5.0E-51	[5..142]	[11..151]
rps1502 - 40S ribosomal protein S15 RS15B_SCHPO - 40S ribosomal protein S15-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1502 PE=1 S...	1.0E-49	[1..142]	[10..154]
RS15_ORYSA - (P31674) 40S ribosomal protein S15	2.0E-49	[1..142]	[10..152]
RS15_MOUSE - 40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=1 SV=2 gi\|156857633 - gi\|156857633\|gb\|ABU96168.1\| ribosomal protein S15 [Ailuropoda melanoleuca] RS15_RAT - 40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2 RS15_MESAU - 40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2 tr\|M3WDW4\|M3WDW4... - Ribosomal protein S15 OS=Felis catus GN=RPS15 PE=3 SV=1 gi\|18000271 - gi\|18000271\|gb\|AAL54897.1\|AF159542_1 ribosomal protein S15 [Lapemis hardwickii] RS15_PONPY - 40S ribosomal protein S15 - Pongo pygmaeus (Orangutan) RS15_PIG - 40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=1 SV=2 RS15_CHICK - 40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2 gi\|55647825 - gi\|55647825\|ref\|XP_512237.1\| PREDICTED: similar to insulinoma protein (rig) [Pan troglodytes] gi\|109122737 - gi\|109122737\|ref\|XP_001095102.1\| PREDICTED: similar to 40S ribosomal protein S15 (RIG protein) isofo... RS15_PONAB - 40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3 gi\|187609270 - gi\|187609270\|pdb\|2ZKQ\|SS Chain s, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... gi\|224087809 - gi\|224087809\|ref\|XP_002198363.1\| PREDICTED: putative ribosomal protein S15 [Taeniopygia guttata] RPS15 - ribosomal protein S15	5.0E-49	[1..142]	[1..145]
gi\|16930761 - gi\|16930761\|gb\|AAL32040.1\|AF439281_1 ribosomal S15 protein [Retama raetam]	9.0E-49	[7..142]	[1..139]
gi\|15294041 - gi\|15294041\|gb\|AAK95197.1\|AF402823_1 40S ribosomal protein S15 [Ictalurus punctatus]	3.0E-48	[1..142]	[1..145]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAVNAKKR VFKTHSYRGV DLEKLLEMST EDFVKLAPAR VRRRFARGMT SKPAGFMKKL  60
   61 RAAKLAAPEN EKPAPVRTHM RNMIIVPEMI GSVVGIYNGK AFNQVEIRPE MLGHYLGEFS 120
  121 ITYTPVRHGR AGATTSRFIP LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	395.54902
Match:	1k5xS_
Description:	No description for 1k5xS_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits