YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP2A
Organism:	Saccharomyces cerevisiae
Length:	106 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP2A.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	115.0	[0..5]	[106..10]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	106.0	[0..1]	[106..1]
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	103.0	[0..1]	[71..1]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	101.0	[0..1]	[106..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1	101.0	[0..1]	[106..2]
gi\|68397381 - gi\|68397381\|ref\|XP_686604.1\| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]	100.0	[0..1]	[106..158]
gi\|56758742 - gi\|56758742\|gb\|AAW27511.1\| unknown [Schistosoma japonicum]	100.0	[0..1]	[106..1]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	100.0	[0..4]	[106..10]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLAAYLLL NAAGNTPDAT KIKAILESVG IEIEDEKVSS VLSALEGKSV DELITEGNEK  60
   61 LAAVPAAGPA SAGGAAAASG DAAAEEEKEE EAAEESDDDM GFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.318759
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.468	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.419	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.419	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.415	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.397	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.334	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.286	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.284	N/A	N/A	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.247	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.246	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits