| Protein: | SMC5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1093 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMC5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [81..993] | [862..1807] |
|
|
0.0 | [81..993] | [865..1810] |
|
|
0.0 | [81..993] | [865..1810] |
|
|
0.0 | [81..993] | [864..1809] |
|
|
0.0 | [87..993] | [871..1810] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MTSLIDLGRY VERTHHGEDT EPRSKRVKIA KPDLSSFQPG SIIKIRLQDF VTYTLTEFNL 60
61 SPSLNMIIGP NGSGKSTFVC AVCLGLAGKP EYIGRSKKVE DFIKNGQDVS KIEITLKNSP 120
121 NVTDIE
|
| Detection Method: |  |
| Confidence: | 8.0 |
| Match: | 1ii8A_ |
| Description: | Rad50 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [127-283] |
1 11 21 31 41 51
| | | | | |
1 YIDARDETIK ITRIITRSKR RSDYLINDYQ VSESVVKTLV AQLNIQLDNL CQFLSQERVE 60
61 EFARLKSVKL LVETIRSIDA SLLDVLDELR ELQGNEQSLQ KDLDFKKAKI VHLRQESDKL 120
121 RKSVESLRDF QNKKGEIELH SQLLPYVKVK DHKEKLN
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [284-300] |
1 11 21 31 41 51
| | | | | |
1 IYKEEYERAK ANLRAIL
|
|
Region B: Residues: [372-404] |
1 11 21 31 41 51
| | | | | |
1 TIISTKEDFL RSQEILAQTH LPEKSVFEDI DIK
|
| Detection Method: | |
| Confidence: | 2.154902 |
| Match: | 1cii__ |
| Description: | Colicin Ia; Colicin Ia, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [301-371] |
1 11 21 31 41 51
| | | | | |
1 KDKKPFANTK KTLENQVEEL TEKCSLKTDE FLKAKEKINE IFEKLNTIRD EVIKKKNQNE 60
61 YYRGRTKKLQ A
|
|
Region B: Residues: [405-435] |
1 11 21 31 41 51
| | | | | |
1 RKEIINKEGE IRDLISEIDA KANAINHEMR S
|
| Detection Method: | |
| Confidence: | 2.154902 |
| Match: | 1cii__ |
| Description: | Colicin Ia; Colicin Ia, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [436-713] |
1 11 21 31 41 51
| | | | | |
1 IQRQAESKTK SLTTTDKIGI LNQDQDLKEV RDAVLMVREH PEMKDKILEP PIMTVSAINA 60
61 QFAAYLAQCV DYNTSKALTV VDSDSYKLFA NPILDKFKVN LRELSSADTT PPVPAETVRD 120
121 LGFEGYLSDF ITGDKRVMKM LCQTSKIHTI PVSRRELTPA QIKKLITPRP NGKILFKRII 180
181 HGNRLVDIKQ SAYGSKQVFP TDVSIKQTNF YQGSIMSNEQ KIRIENEIIN LKNEYNDRKS 240
241 TLDALSNQKS GYRHELSELA SKNDDINREA HQLNEIRK
|
| Detection Method: | |
| Confidence: | 2.154902 |
| Match: | 1cii__ |
| Description: | Colicin Ia; Colicin Ia, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [714-903] |
1 11 21 31 41 51
| | | | | |
1 KYTMRKSTIE TLREKLDQLK REARKDVSQK IKDIDDQIQQ LLLKQRHLLS KMASSMKSLK 60
61 NCQKELISTQ ILQFEAQNMD VSMNDVIGFF NEREADLKSQ YEDKKKFVKE MRDTPEFQSW 120
121 MREIRSYDQD TKEKLNKVAE KYEEEGNFNL SFVQDVLDKL ESEIAMVNHD ESAVTILDQV 180
181 TAELRELEHT
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [904-1093] |
1 11 21 31 41 51
| | | | | |
1 VPQQSKDLET IKAKLKEDHA VLEPKLDDIV SKISARFARL FNNVGSAGAV RLEKPKDYAE 60
61 WKIEIMVKFR DNAPLKKLDS HTQSGGERAV STVLYMIALQ EFTSAPFRVV DEINQGMDSR 120
121 NERIVHKAMV ENACAENTSQ YFLITPKLLT GLHYHEKMRI HCVMAGSWIP NPSEDPKMIH 180
181 FGETSNYSFD
|
| Detection Method: | |
| Confidence: | 25.522879 |
| Match: | 1e69A_ |
| Description: | Smc head domain |
Matching Structure (courtesy of the PDB): |
|
