YRC Public Data Repository - Protein Structure Prediction

Protein:	DSE4
Organism:	Saccharomyces cerevisiae
Length:	1117 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSE4.

Description	E-value	Query Range	Subject Range
gi\|6562336 - gi\|6562336\|emb\|CAB62580.1\| endo-1,3-beta-glucanase [Candida albicans] gi\|68478570, gi\|... - gi\|68478570\|ref\|XP_716667.1\| hypothetical protein CaO19.10921 [Candida albicans SC5314], gi\|46438341...	0.0	[366..1114]	[18..734]
ENG2_YEAST - Endo-1,3(4)-beta-glucanase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACF2 PE=1 S... gi\|151941305 - gi\|151941305\|gb\|EDN59683.1\| assembly complementing factor [Saccharomyces cerevisiae YJM789] ACF2 - Intracellular beta-1,3-endoglucanase, expression is induced during sporulation; may have a role in c...	0.0	[333..1113]	[9..779]
eng1 - endo-1,3-beta-glucanase Eng1 ENG1_SCHPO - Endo-1,3(4)-beta-glucanase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eng1 PE=3 SV=...	0.0	[382..1112]	[27..737]
gi\|10937881 - gi\|10937881\|gb\|AAF13033.2\|AF121133_1 beta(1-3)endoglucanase [Aspergillus fumigatus]	0.0	[426..1111]	[37..722]
gi\|15221056 - gi\|15221056\|ref\|NP_173267.1\| glycosyl hydrolase family 81 protein [Arabidopsis thaliana]	0.0	[403..1112]	[3..648]
gi\|5019452 - gi\|5019452\|emb\|CAA71307.1\| beta-glucan binding protein [Glycine max]	0.0	[399..1113]	[1..666]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[399..1113]	[1..666]

Back

Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLYLTLLFL LSFVECSYIS FISNNADEIL ETDLIETLSY ATLTVGEPYV AQSVVVTRVS  60
   61 AASHSPLSVS PKNRVSASPI NSQDSDSNTR TAVQLSLSLS NYASQVSQKI SAQTNNDPVT 120
  121 VSNIYANDNS KSKSSVHNLS SVSGVASVMP SASTMRKVTT LLSQTASTST STLFSSSLSI 180
  181 SGTQLNGTLL TSVSKGTIDP LVTQMPSYSS QETKIIPSSL TSNKTIYTIS VRTNAATATG 240
  241 EDSFIASTPA SSTLFYPSNS TQDLVQTLAS TTASPAYPSN RTQITLSPSV SLYSTTSPIY 300
  301 PSNITENGSS PSPSLSSTVS PVYPSSSTGN ILLSSLFSTV DSSSSPVSST LDTIYVSSSM 360
  361 QATISSSSSS RQTKTSSSSL STSTSSTATT TENSSTTTIV NLFNAVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [408-1117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDEPPTVFDR SPNPMSLADG VSNDGPIQTN KFYTNLIVGS QESPAFVYPY SLWKYTSSSY  60
   61 GFAVQHTTVD QYSYGGYDSS GNAEYLVNPL GIAHVVFSAS NFDSSMTMQV DEMTLSSTRV 120
  121 VLSESNDSSN YLEIPLVQGM GFATGIYHGS LNAKIGSSVG FNTIVSESSS NLAQGILKYR 180
  181 ITLLNGVTWL CYVIGPDDLT STDFSLEVSS EYEIKASASV DGLIIQLAVA PSETDYEVFY 240
  241 DQAAGMYVTN FKLQGVSDGS TATYEFSYTT QGESASGSTM IFALPHHESS FSDIMQDYYT 300
  301 GIQLASTTKG VMNGYLTTSL QFSTSLNRQI SWLPWSSQLG SNLLEYSKEQ LQLLAEVANS 360
  361 ELQVSISESI SGLNTYYLGK VIDKYSYILL TVSEIIQDEA STKSTLENIK SAFDILLQNE 420
  421 QTYPLIYDTK FNGLVSSGDW GSTSTQYDFG NTYYNDHHFH YGYIIHAAAV IGYVDSKLNG 480
  481 TWAADNKDWV NSLVRDVANP SEKDEYFAQS RMFDWFNGHS WAAGLYENGN GKNEESSSED 540
  541 YNFAYAMKLW GATIGDQSME LRGDLMISIM KDAMNDYFYY QNDNTVEPEE IIGNKVSGIL 600
  601 FDNIIDYTTY FGTNTEYIHG IHMLPITPVS SNIRSETFVE EEWQTKIEPI IESIESGWTG 660
  661 ILKLNQALFD PVDSYAFFSD STFDSSTYLD NGMSRTWALA FSGGLANSIA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	1000.0
Match:	PF03639
Description:	Glycosyl hydrolase family 81

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [390-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTENSSTTTI VNLFNAVSTD EPPTVFDRSP NPMSLADGVS NDGPIQTNKF YTNLIVGSQE  60
   61 SPAFVYPYSL WKYTSSSYGF AVQHTTVDQY SYGGYDSSGN AEYLVNPLGI AHVVFSASNF 120
  121 DSSMTMQVDE MTLSSTRVVL SESNDSSNYL EIPLVQGMGF ATGIYHGSLN AKIGSSVGFN 180
  181 TIVSESSSNL AQGILKYRIT LLNGVTWLCY VIGPDDLT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [608-846]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STDFSLEVSS EYEIKASASV DGLIIQLAVA PSETDYEVFY DQAAGMYVTN FKLQGVSDGS  60
   61 TATYEFSYTT QGESASGSTM IFALPHHESS FSDIMQDYYT GIQLASTTKG VMNGYLTTSL 120
  121 QFSTSLNRQI SWLPWSSQLG SNLLEYSKEQ LQLLAEVANS ELQVSISESI SGLNTYYLGK 180
  181 VIDKYSYILL TVSEIIQDEA STKSTLENIK SAFDILLQNE QTYPLIYDTK FNGLVSSGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [847-935]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WGSTSTQYDF GNTYYNDHHF HYGYIIHAAA VIGYVDSKLN GTWAADNKDW VNSLVRDVAN  60
   61 PSEKDEYFAQ SRMFDWFNGH SWAAGLYEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [936-1117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNGKNEESSS EDYNFAYAMK LWGATIGDQS MELRGDLMIS IMKDAMNDYF YYQNDNTVEP  60
   61 EEIIGNKVSG ILFDNIIDYT TYFGTNTEYI HGIHMLPITP VSSNIRSETF VEEEWQTKIE 120
  121 PIIESIESGW TGILKLNQAL FDPVDSYAFF SDSTFDSSTY LDNGMSRTWA LAFSGGLANS 180
  181 IA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits